UFO07856.5prime Sequence
1105 bp (1017 high quality bases) assembled on 2011-07-14
> UFO07856.5prime
CAGTCGACATGCTGAAACCATTCGCCGTGATTATCGGAATTTTTTATTTA
GGTTCCACCATTAAGGGCGTCGTGGCCATTCTGAACTGTATCCTAGCACG
TCAGCTATGCTTCGAGGATCCCTCATGTTCGGCCATTTTGGAAATAATAC
CTCGCGTCTGCGGACCCATTCCAGTGTCCTGCAGCACGGTGACGGTGACC
AAGTGTCAGGCTGCCCTGCGCACCCTGCAGGCCTTCCAGTTCTTTCGGCC
CACCTGCCTGTGCAAGGAGCCCGGAATGGATCCGGACTGCAATCACTTTC
GGGACTTTCTCTTCGATCATCCATGCGGATTTGTGCTGAAGAAAGCCGAA
AAGGATCCGTACCCCATTGATGCCCTACCAACTTGCAACCATGCACTTTC
CGTCTGCCAACAGGAACGCAAATGTCTAAAGCTCTTCGAGGACTTCAAAA
CGCATTGCAAAGTGCGCGACAACAAATGCAAAATGGAAAACAGGGACGCC
TGCCACGACTCCTGGACCAACCTGCGTCTGTCGCCCATGTTCGGATGCAT
CTGCCCGAACAACCATATGAAAAAGCGCTGTGATCGTATCTTTAATATTG
TTAATCACAATCCTTGCGTGGGTAAGTTTCGACTGGCGATGCTGAACTGT
GCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCA
TAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCT
GGTCATGACTAGTGCTTGGATTCTCACCAATAAAAACGCCCGGCGGCAAC
CGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCT
ATCAACAGGAGTCCAAGCGAGCTCGATATCAATTACGCCCCGCCCTGCCA
CTCATCGCAGTACTGTGTAATTCATTAGCATTCTGCCGACATGCAGCCAT
CACAAACGGCATGATGACTGAATCGCAGCGCATCAGCACCTGTCGCTTGG
CGTATAAATATTTGCCAAGTGAAAACGGGGGCGAAGAAGTTGTCATATTG
CCGTTTATCCAACTGGGAAACTCACCAGATGCTGAACGAAACATATTTCC
ATAGC
UFO07856.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:30:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfrl-RK | 3139 | CG43224-RK | 1610..2253 | 7..650 | 3220 | 100 | Plus |
| Gfrl-RF | 6524 | CG43224-RF | 1610..2226 | 7..623 | 3085 | 100 | Plus |
| Gfrl-RJ | 6630 | CG43224-RJ | 672..1286 | 7..621 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:30:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20403224..20403397 | 345..172 | 870 | 100 | Minus |
| 3R | 32079331 | 3R | 20401150..20401309 | 650..491 | 800 | 100 | Minus |
| 3R | 32079331 | 3R | 20403012..20403162 | 494..344 | 755 | 100 | Minus |
| 3R | 32079331 | 3R | 20411082..20411206 | 174..50 | 625 | 100 | Minus |
| 3R | 32079331 | 3R | 20465005..20465051 | 53..7 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:30:26 has no hits.
UFO07856.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:36 Download gff for
UFO07856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42801-RC | 1565..2216 | 1..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:19:36 Download gff for
UFO07856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfrl-RK | 1602..2253 | 1..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:03 Download gff for
UFO07856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfrl-RK | 1602..2253 | 1..650 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:03 Download gff for
UFO07856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20403013..20403160 | 346..493 | 100 | <- | Minus |
| 3R | 20403224..20403394 | 175..345 | 100 | <- | Minus |
| 3R | 20411082..20411211 | 46..174 | 99 | -- | Minus |
| 3R | 20465013..20465053 | 1..45 | 91 | | Minus |
| 3R | 20401150..20401306 | 494..650 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:19:36 Download gff for
UFO07856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16226872..16227028 | 494..650 | 100 | <- | Minus |
| arm_3R | 16228735..16228882 | 346..493 | 100 | <- | Minus |
| arm_3R | 16228946..16229116 | 175..345 | 100 | <- | Minus |
| arm_3R | 16236804..16236933 | 46..174 | 99 | -- | Minus |
| arm_3R | 16290735..16290775 | 1..45 | 91 | | Minus |
