UFO07859.5prime Sequence
1117 bp (1021 high quality bases) assembled on 2011-07-14
> UFO07859.5prime
CAGTCGACATGGCACAACCAGGCGGAGATCACATGATCATCGCTATCACC
ACACTGTTGGTTTTGATCTGTTCCCTACATCTCGCCAATGCAGCCAGCTA
TCAGCTACAATCTTACGATCTTGATACGGATAATAGGGCTGCATCGAACT
CCAGCGAGGAGGTGTTCAATGGCGGAGTCACGTCCCTGGAAAGACCTCTT
TCTTGGCTGCGGAATGCCAACAGCGTGTTCGGCAGTCCCGCTGGTCATGT
GGTCATCCAGGTGGCCAAGGAGCTGTTACATCGATCAGCCGGAAACAGTC
AAGTTCTAAGTCTGAATCTGACCAACCTGCTTATCATCATACTCCTGAAA
ATACTTATCTTCTCAGCCGGAATGCTGGGCGCTGGGCACTGGAGTGGCTA
TGGTTATGGACATGGTCGCTCAGCCGGTCGTAGTGATAACTTCGGTTTGG
GCATAGCTTCTGGCGATGACTATCTTATAACCGGATTTCTCGCCGCCCAA
GGAGCCGGCAGAGATGAGTGCCTCTATGCAGCATCCTGTGCCTGCCCCAC
ATCGGCCTATGAGTACGCGAAAGCAGGACGTGCTCTTATGGGCGCCATTG
AAGTTTTCCAAGGAGTGCCGCTGGAGAAGCCGCGCTACAACGACCTCATC
GTCCTGATGGAGCGAGCCGCCTACGATGGCTTCCGAGGAGTGGCCTGCAA
CACGACCCAGACCTGTGACGGATTGCTTGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAT
CATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATT
CTCACCAATAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAG
ATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAGCCGAGC
TCGATATCAAATTACGCCCCGCCCTGCCACTCATTCGCAGTACTGTTTGT
AATTCATTAAGCATTCTGGCGAACATGGAAAGCCATCCAAAACGGCATGA
TGACCTGAATCGCCAGCGCATCAGCACTGTCGCCTGCCGTAATATGGCCC
ATGTGAACTGGGCGAAA
UFO07859.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:30:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12420-RA | 855 | CG12420-RA | 61..780 | 9..728 | 3600 | 100 | Plus |
| CG12817-RB | 1060 | CG12817-RB | 830..945 | 728..613 | 580 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:30:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10223116..10223426 | 303..613 | 1555 | 100 | Plus |
| 3R | 32079331 | 3R | 10222758..10223053 | 9..304 | 1480 | 100 | Plus |
| 3R | 32079331 | 3R | 10223555..10223670 | 613..728 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:30:05 has no hits.
UFO07859.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:32 Download gff for
UFO07859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12420-RA | 46..773 | 9..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:19:23 Download gff for
UFO07859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12420-RA | 61..788 | 9..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:55 Download gff for
UFO07859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12420-RA | 61..788 | 9..736 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:55 Download gff for
UFO07859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10223116..10223426 | 303..613 | 100 | -> | Plus |
| 3R | 10223556..10223678 | 614..736 | 97 | == | Plus |
| 3R | 10222758..10223051 | 9..302 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:19:23 Download gff for
UFO07859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6048480..6048773 | 9..302 | 100 | -> | Plus |
| arm_3R | 6048838..6049148 | 303..613 | 100 | -> | Plus |
| arm_3R | 6049278..6049400 | 614..736 | 97 | == | Plus |
