UFO07860.5prime Sequence
1114 bp (1018 high quality bases) assembled on 2011-07-14
> UFO07860.5prime
CAGTCGACATGGCCCTGATCAAGATCACCCTCATCTGCTGCGCTCTGATC
GCCGCCATCGAGTGCGCCCTGCTCCCAGCTGCTGTTCCAGTGGGAGTGCC
CCTCAACACGGAGGTGGATCCACATCCGCAGTACGCGTTCGCCTATAATG
TGCAGGATGCCCTTACCGGGGACAGCAAGAGCCAGCAGGAGGTGCGGGAT
GGAGATGTGGTCAAGGGCTCCTACTCGGTGGTCGATGCCGATGGTTCACT
GCGCACCGTCTTCTACACCGCCGATCCCATCAACGGTTTCAATGCGGTGG
TGCAGCGAGGACCAGTTCCGGTGGCTGCTCGCCCATTGGTGGCTCCAGTG
GCTGCTCCAATCTTGGGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACA
ACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATA
AAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTC
TGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCA
AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG
CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCG
CCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTG
AAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAACTG
GTGAAACTCACCCAGGGATTGGCTGAGACGAAAACATATTCTCAATAAAC
CCTTTAGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAA
TATATGTGTAGAAACTGCCGGAATCGTCGTGTATTCACTCAGAGCGATGA
AAACGTTTCAGTTTGCTCATGGAAACGGTGTACAAGGTTAACACTATCCC
AATATCACCAGCTCACCGTCTTTTCATGCCCTATCGAATTCGGATGAGAC
ATTCATCAAGGCGGCCAGAAATGTGATAAAGCCCGATAACCTGGCCTTAT
TTCCTTACGGCTCT
UFO07860.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:30:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr64Ab-RA | 552 | CG15007-RA | 68..428 | 8..368 | 1805 | 100 | Plus |
| Cpr64Ad-RB | 961 | CG1259-RB | 489..680 | 114..305 | 270 | 76 | Plus |
| Ccp84Ad-RA | 735 | CG2341-RA | 235..410 | 117..292 | 235 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:30:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4211004..4211350 | 368..22 | 1735 | 100 | Minus |
| 3L | 28110227 | 3L | 4215942..4216133 | 114..305 | 270 | 76 | Plus |
| 3R | 32079331 | 3R | 6693027..6693202 | 117..292 | 235 | 75.6 | Plus |
| 2L | 23513712 | 2L | 9932724..9932862 | 303..165 | 230 | 77.7 | Minus |
| 3L | 28110227 | 3L | 1841032..1841124 | 275..183 | 210 | 81.7 | Minus |
| 3R | 32079331 | 3R | 6689785..6689960 | 292..117 | 205 | 74.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:30:09 has no hits.
UFO07860.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:33 Download gff for
UFO07860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr64Ab-RA | 63..433 | 1..375 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:19:26 Download gff for
UFO07860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr64Ab-RA | 63..433 | 1..375 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:56 Download gff for
UFO07860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr64Ab-RA | 63..433 | 1..375 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-27 01:04:56 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 16:19:26 has no hits.
