UFO07868.5prime Sequence
1087 bp (991 high quality bases) assembled on 2011-07-14
> UFO07868.5prime
CAGTCGACATGTGGTACAGCAAGTGCAGTTGGACTTTGGTAGTGTTGGTG
GCTCTCTTTGCTCTCGTGACAGGTTCCTGCCTGGAATACGGACATTCGTG
TTGGGGAGCTCATGGCAAGCGGTCCGGCGGGAAGGCGGTCATAGATGCTA
AACAGCATCCCTTGCCAAATTCATATGGCTTGGATAGCGTGGTGGAGCAA
CTGTACAACAACAACAACAACAACCAGAACAACCAGGACGACGACAACAA
CGATGACGACAGCAACAGAAATACGAATGCGAATAGTGCCAACAACATAC
CCCTGGCTGCTCCAGCCATTATAAGTCGTCGAGAATCGGAGGATCGGCGA
ATCGGTGGCCTAAAGTGGGCGCAGCTGATGCGGCAGCACCGCTATCAATT
GCGCCAGTTGCAGGATCAGCAGCAGCAGGGGCGTGGCAGGGGCGGTCAGG
GTCAGTACGATGCGGCAGCCGAGAGTTGGAGGAAACTGCAGCAGGCTCTG
CAGGCCCAAATCGATGCCGACAATGAGAACTACTCGGGCTACGAGCTAAC
GAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGA
TCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCG
GCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTG
GATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCC
CTGCCACTCATCGCAGTACTGTTGTAATTCATTTAGCATTCTGCCGACAT
GGAAGCCATCACAAACGGCATGATGAACCTGATCGCCAGCGGCATCAGCA
CTTGTCGCCTTGCGTATATATTTGCCCATGTGAAACGGGGCGAAGAGTGT
CATATGCCACGTTAATCAACTGTGAACTCACCAGGATGCTGAACGAAACA
TATTCTCATAACCCTTAGGAATAGGCAGGTTCACCGGTACACGCCATCCT
GGCATATTATGTGTAGAACCTGCGAATCCTTGATCTT
UFO07868.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:30:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CCHa1-RB | 857 | CG14358-RB | 177..722 | 9..554 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:30:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14092639..14093042 | 554..151 | 2020 | 100 | Minus |
| 3R | 32079331 | 3R | 14096594..14096659 | 74..9 | 330 | 100 | Minus |
| 3R | 32079331 | 3R | 14093137..14093185 | 155..107 | 245 | 100 | Minus |
| 3R | 32079331 | 3R | 14093273..14093311 | 108..70 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:30:56 has no hits.
UFO07868.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:40 Download gff for
UFO07868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14358-RB | 177..731 | 9..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:19:53 Download gff for
UFO07868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CCHa1-RB | 177..731 | 9..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:15 Download gff for
UFO07868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CCHa1-RB | 177..731 | 9..564 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:15 Download gff for
UFO07868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14093137..14093183 | 109..155 | 100 | <- | Minus |
| 3R | 14093273..14093308 | 73..108 | 100 | <- | Minus |
| 3R | 14096596..14096659 | 9..72 | 100 | | Minus |
| 3R | 14092630..14093037 | 156..564 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:19:53 Download gff for
UFO07868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9918352..9918759 | 156..564 | 99 | <- | Minus |
| arm_3R | 9918859..9918905 | 109..155 | 100 | <- | Minus |
| arm_3R | 9918995..9919030 | 73..108 | 100 | <- | Minus |
| arm_3R | 9922318..9922381 | 9..72 | 100 | | Minus |
