UFO07869.5prime Sequence
1087 bp (992 high quality bases) assembled on 2011-07-14
> UFO07869.5prime
CAGTCGACATGGAGCTCTCGTTGGATGAACCGCAATGCGCATCCTTCTTT
TGCATCCTGGGTGCCGTGTGCGCCATTGTCTTTTCGACATTGGGAGCCGC
CTACGGAACAGCGAAGGCTTCTGTGGGAATCTCTTCGATGTCAATCAAGC
ATCCGCAGCTGATCATGAAGGCGATTGTTCCAGTGGTTATGGCTGGCATT
ATAGCCATTTATGGACTGGTGATCGCGGTCCTGCTTGCTGGATCACTTAG
CAGCCCCTATAGCGCCTACAAGGGTTTCCTAAACCTCAGTGCTGGACTGG
CGGTGGGAGTCTCTGGGATGGGGGCTGGAATTGCTATTGGCGTGGTGGGC
GAAGCTGGAGTCCGTGCATCTGCCCAGCAGCCAAAACTCTTTGTGGCCAT
CATTTTAATATTGATATTTGCCGAGGTCTTGGGTCTGTATGGTCTCATAG
TGGCCATTTATTTGTTTTCCAAGGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTG
AATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCA
TGGTGAAAACGGGGGCGAGAGTTGTCCATATTGGCCACGTTTAATCAAAC
TGGTGAACTCACCCAGGATGCTGAGACGAAAACATATTTCTCATAACCCT
TTAGGAATAGCCAGTTTTCACCGTACACGCCACATCTTGCGAATTTATTG
TTGTAGAAACTGCGATCGTCTGTATCACTCGAGCGATGAAACCGTTCAAG
TGCTCATGAAACCGTGTACAAGGTGAACCTATCCATT
UFO07869.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:31:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha16-4-RA | 567 | CG9013-RA | 47..511 | 9..473 | 2325 | 100 | Plus |
| Vha16-3-RB | 633 | CG32090-RB | 229..529 | 160..460 | 230 | 72.6 | Plus |
| Vha16-3-RA | 587 | CG32090-RA | 183..483 | 160..460 | 230 | 72.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:30:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16947714..16948178 | 473..9 | 2325 | 100 | Minus |
| 3L | 28110227 | 3L | 11473727..11473868 | 319..460 | 215 | 76.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:31:01 has no hits.
UFO07869.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:41 Download gff for
UFO07869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15614-RA | 2007..2471 | 9..473 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:19:55 Download gff for
UFO07869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha16-4-RA | 47..511 | 9..473 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:17 Download gff for
UFO07869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha16-4-RA | 47..511 | 9..473 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:17 Download gff for
UFO07869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16947714..16948178 | 9..473 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:19:55 Download gff for
UFO07869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12835219..12835683 | 9..473 | 100 | | Minus |
