UFO07870.5prime Sequence
1148 bp (1017 high quality bases) assembled on 2011-07-14
> UFO07870.5prime
CAGTCGACATGATTATCCAGAACAGAAGTCCTCTTATAGGCCACATTTTG
AGACGGTGCCATCGCCAAGCGGTGGAAAGCAACGCTATAAAAGCCAATTT
AACAGCATATTTTGGAAAATGGCCCGAAACGGAGCAGAAGGAGTTTCGCC
AGCATATGCGCATCATCACGGATTTCATTAGTGAGCCAGAGGAACAGCAG
CTGCACGAGGAGATCGAGCCCTATATGAGCCGTCTGCGCTACGAGTTCGA
TCACTGGGACGATGCCATACACGGTTTTCGGGAGACGGAGCGAAAGAAGT
GGTTCCCTAAAAACAGAGAGATCCTGGAGCGCGTGCGCCAAGTCGCCTTC
GATGGAGCAGTTATGCCCTATGTCCACATCCTAGATCTTGCACCCGATGG
CGTTATCAAGCCCCATGTGGATAGCACGAGATACTGCGGCAACACCATCT
CTGGAATCAGCCTACTTAGCGACAGTGTGATGCGACTTGTGCGCACGGAT
GAGCAGCGGTACCAACAGCAATCGTCGGGAACTGCAACGGATCCGAATTC
CCAGGGGTCAGAACCCGATGCAGCCTATCGCCATCAACCGGAGGCGTCTC
TAAAGAACAACTTCTACGCTGACATCCTGTTGCCGCGCCGCTCCTTGTAC
ATAATGAGCCACACGGCTCGCTACAAATTCACACACGAGATACTAGCTAA
GGAGCACTCCCAGTTTCAGGGTGCGCTGGTGCCCAGGACACGTCGCATTT
CCATCATTTGTCGCAACGAACCCGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGATTCTCACC
AATAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAATCCAGATGGAGT
TCTGAGTCATTACTGGATCTATCAAAAGAGTCCAAGCGAGCTCGATATTC
AATTACGCCCCGCCCTGCCCTCATCGCAGGTCTGTTGTAATTCATTAAGG
CATTTCTCGACATTGAAAGCCATCACAACCGCATGATTGACCTGAATCCG
CCAGCAGCAATCTACGTACCTTGTCCTGGCTATATATATAATCTTTGC
UFO07870.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:30:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14130-RA | 1067 | CG14130-RA | 57..821 | 9..773 | 3825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:30:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11816123..11816464 | 432..773 | 1710 | 100 | Plus |
| 3L | 28110227 | 3L | 11815626..11815823 | 67..264 | 990 | 100 | Plus |
| 3L | 28110227 | 3L | 11815891..11816058 | 264..431 | 840 | 100 | Plus |
| 3L | 28110227 | 3L | 11815500..11815560 | 9..69 | 305 | 100 | Plus |
| 3L | 28110227 | 3L | 11837713..11837764 | 618..567 | 185 | 90.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:30:30 has no hits.
UFO07870.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:36 Download gff for
UFO07870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14130-RA | 16..798 | 1..785 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:19:38 Download gff for
UFO07870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14130-RA | 16..798 | 1..785 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:05 Download gff for
UFO07870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14130-RA | 51..833 | 1..785 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:05 Download gff for
UFO07870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11815494..11815560 | 1..69 | 94 | -> | Plus |
| 3L | 11815629..11815822 | 70..263 | 100 | -> | Plus |
| 3L | 11815891..11816058 | 264..431 | 100 | -> | Plus |
| 3L | 11816123..11816476 | 432..785 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:19:38 Download gff for
UFO07870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11809223..11809576 | 432..785 | 98 | == | Plus |
| arm_3L | 11808594..11808660 | 1..69 | 94 | -> | Plus |
| arm_3L | 11808729..11808922 | 70..263 | 100 | -> | Plus |
| arm_3L | 11808991..11809158 | 264..431 | 100 | -> | Plus |
