UFO07879.5prime Sequence
1081 bp (1004 high quality bases) assembled on 2011-07-14
> UFO07879.5prime
CAGTCGACATGCTACGATTGCTAGTTTGTTTGTGGCTACTGGTGTACAGT
GGTTCCAGCTATGAGGTGCAAAACAAACCCGTCACGGAAGATTGCCTAGA
CTGTCTATGCGAAACAATGAGTGGCTGCAATGCATCCGCAATTTGCGTAA
ATGGGGCCTGCGGTATATTCCGAATCACTTGGGGCTACTGGGTGGAGGCG
GGCAAACTAACTTTGCCCACAGATACAGCTCTCTCCGAAGACGCTTTTAC
GAACTGCGTTAATCAGCCCCACTGTGCAGCGAACACGGTGCAGAATTATA
TGTTCAAACATGGCCAGGATTGCAATGGAGACGAGCACATCGATTGCCTG
GATTTCGGAGCACTCCACAAACTGGGCAATCTGAAGTGCCAGGAAGAGTT
GCCCTACATCTTTGCCAAAGTCTTCAATCGATGTCTGAAATCCAAGGAGC
GGATGGCAGAGGAAAAGATCATCAAGGAGCAGGAAACGGTTTCAACAGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGT
CATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCG
AGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTAT
CAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCAC
TCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCC
ATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGT
CGCCTTGCGTATATATTTGCCCATGGTGAAACGGGGGCGAAGAAGTTGTC
CATATTGGCCACGTTTAAATCAAAACTGTTGAAACTCACCCAGGGATTGC
TGAGACGAAAAACATATTCTCAATAAACCCTTTAGGAAATAGCCAGTTTC
ACGTACACGCCACATTTTGCAATATATGGTGTAAGAACCTGCGGAATTCG
TCTGTATCACTCCAGAGCGATGAAAACGTTT
UFO07879.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:31:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6435-RA | 794 | CG6435-RA | 57..545 | 9..497 | 2445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:31:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16874474..16874728 | 243..497 | 1275 | 100 | Plus |
| 2R | 25286936 | 2R | 16874240..16874417 | 66..243 | 890 | 100 | Plus |
| 2R | 25286936 | 2R | 16873828..16873885 | 9..66 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:31:17 has no hits.
UFO07879.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:44 Download gff for
UFO07879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6435-RA | 45..543 | 1..505 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:20:04 Download gff for
UFO07879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6435-RA | 52..550 | 1..505 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:25 Download gff for
UFO07879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6435-RA | 52..550 | 1..505 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:25 Download gff for
UFO07879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16873823..16873885 | 1..66 | 93 | -> | Plus |
| 2R | 16874241..16874417 | 67..243 | 100 | -> | Plus |
| 2R | 16874475..16874728 | 244..497 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:20:04 Download gff for
UFO07879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12761328..12761390 | 1..66 | 93 | -> | Plus |
| arm_2R | 12761746..12761922 | 67..243 | 100 | -> | Plus |
| arm_2R | 12761980..12762233 | 244..497 | 100 | == | Plus |
