UFO07880.5prime Sequence
1107 bp (1003 high quality bases) assembled on 2011-07-14
> UFO07880.5prime
CAGTCGACATGGAAAAGGCAGCTGGTTTTGTTATTTTTCGCCGCCTTTGT
GGGGAAATACAATACCTATTGCTGAAGGCTTCCTACGGCTCCTTCCACTG
GAGTTCTCCCAAGGGACATGTGGACCCAGGCGAGGATGATTTTACCACTG
CCCTGCGAGAAACGAAAGAGGAAGCCGGGTACGACGAGAAGGATCTGATC
ATATACAAGGACACTCCGCTGACCCTGAATTATCAGGTGCAAGACAAGCC
GAAGATTGTTATTTACTGGCTAGCGGAGCTGCGGAATCCCTGCCAGGAGC
CCATTCTCTCCGAGGAGCACACCGACCTCAAGTGGCTGCCCAAGGAGGAG
GCCAAGCAGTGCGTCGGCTTTAAGGATAACCAAGTCATGATCGACAAGTT
CCACCAAATGATTTTAGATCAAAACAAACCAATGGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAAT
CATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCT
TGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACA
AATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCA
AGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACT
GTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCA
TGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATA
ATATTTGCCCATGGTGAAACGGGGGCGAAGAAGTTGTCCATATTGGCCAC
GTTTAAATCAAAACTGGTGAACTCACCCAGGGATGGCTGAGACGAAAAAC
ATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACA
CGCCACATCTTGCGAATTATTTGTTGTAGAAACTGCGGAATCGTCATGGT
ATTCACCTCCAGAGCGATGAAAACGGTTTCAAGTTTGCTCAATGGAAACG
GGTAACAGGTGAACCTATTCCATATCACAGCCACCGTTTTCATGCCATAC
AAATTTC
UFO07880.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:31:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Apf-RA | 555 | CG31713-RA | 51..478 | 7..434 | 2140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:31:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9938255..9938511 | 434..178 | 1285 | 100 | Minus |
| 2L | 23513712 | 2L | 9938568..9938740 | 179..7 | 865 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:31:21 has no hits.
UFO07880.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:44 Download gff for
UFO07880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Apf-RA | 43..481 | 1..441 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:20:05 Download gff for
UFO07880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Apf-RA | 46..484 | 1..441 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:26 Download gff for
UFO07880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Apf-RA | 46..484 | 1..441 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:26 Download gff for
UFO07880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9938255..9938510 | 179..434 | 100 | <- | Minus |
| 2L | 9938565..9938745 | 1..178 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:20:05 Download gff for
UFO07880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9938255..9938510 | 179..434 | 100 | <- | Minus |
| arm_2L | 9938565..9938745 | 1..178 | 96 | | Minus |
