UFO07882.5prime Sequence
1092 bp (989 high quality bases) assembled on 2011-07-14
> UFO07882.5prime
CAGTCGACATGAAGGATCGATTCAAGTGGTTGTCGCTGGAGCTGCTCCTG
CTGATAGGCGCCGCAGTCGCCTTTCCGGACGGCGCTCCGGCGGACACGTG
CGTGAAGCAGCGGGCGAATCAGCCGAATCATGGCAAGGCCCGGAGTCAGC
CGGCTCACTCGAATCCGTACGAGGTGGTGGCCGATGCGCAGACCTACCAT
CCCGGCCAGCAGATATCGGTGGTCATCTACCCGCACTCGGACCAGAGCAC
CGTCTTCCGGGGATTTTTCCTGCAGGCGCGTGATGCCAACTCGAACGAGT
GGATCGGCGAGTGGGTGCAGAGCGAGAACACCAAGACCATTCCAGAGTGC
TCGGCCATTACGCACTCGGACAACCGGGACAAGCTGGGCGCCAAGCTCAT
CTGGAAGGCACCGCAAAATAAGCGGGGACAAGTCTACTTCACGGGCACTG
TGCTACAGGAGTACGGAACGTTTTGGAGCGACATTGTGAACAAAGTGCAG
GCGGAGCGGCCAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCA
GGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGC
CTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAAC
GCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT
CATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTAC
GCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCT
GCCGACATGGAAAGCCATCACAAACGGCATGATGAACCTGATCGCCAGCG
GCATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAACGGG
GGCGAGAGTTGTCCATATTGGCCACGTTAAATCAAACTGGTGAACTCACC
CAGGATTGCTGAGACGAAAACTATTCTCATAACCCTTAGGATTAGGCCAG
TTTCACGTACACGCCACATCTGCGATATTGTGTAGACTGCGAATCGTCTT
GGTATTACCACTCGAAGCGATGAACCGTTTCATTCGCCATTG
UFO07882.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:31:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14515-RA | 639 | CG14515-RA | 78..582 | 8..512 | 2510 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:31:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29197633..29198068 | 8..443 | 2165 | 99.8 | Plus |
| 3R | 32079331 | 3R | 29199085..29199154 | 443..512 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:31:05 has no hits.
UFO07882.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:42 Download gff for
UFO07882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14515-RA | 45..560 | 1..519 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:19:57 Download gff for
UFO07882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14515-RA | 72..587 | 1..519 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:19 Download gff for
UFO07882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14515-RA | 72..587 | 1..519 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:19 Download gff for
UFO07882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29199085..29199154 | 443..512 | 100 | == | Plus |
| 3R | 29197627..29198067 | 1..442 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:19:57 Download gff for
UFO07882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25023349..25023789 | 1..442 | 99 | -> | Plus |
| arm_3R | 25024807..25024876 | 443..512 | 100 | == | Plus |
