UFO07887.5prime Sequence
1097 bp (1019 high quality bases) assembled on 2011-07-14
> UFO07887.5prime
CAGTCGACATGAAGAACCAAAAAAATATAACCATTATACTAACTGGGCCA
CCAGGAGTGGGTAAAACTACACTGGTCCACAAAATATGCTCGGCTCTGCA
GGATAGAGGACGCATTCTTCAAGGATTCTACACAGAGGAAATGCGAGGTG
AGGGCACCAGCCAAAGAATCGGCTTCGACGTGGTCACGTTAGCCGGAAAA
CGAGCAATCCTATCTCGCAAGAATCCCGGGGACCAGCTGCGACGACCCAA
AGTGGGAGAGTATTCGGTGTTTGTGCAGGACTTCGACAGTCTCGCTCTGC
CAGTACTTGGCACACAGGATTCCCAACCAGAGCCGGATCTCCTGGTCGTG
GATGAAGTGGGCAAAATGGAGCTGCTTAGCAAGCGATTTGAGTCGGCCAT
GGCTGATCTCCTGAAGAAAAAGCGGGCCCTATTGGTCACCATACCCGAGA
AATCAACATTGGCTTTGGTGGAGCAGCTGAGAAAGTCAGCAGGATCCAAG
ATTTACCAGGTGACCAAATTCAATAGGAACGCCTTGGCTGGAGAGATTAC
AGAAGAGATTACAAAAGCACTTCTTGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAT
GGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTC
GATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATT
CATTAAGCATTCTGCCGACAGGAAGCCATCACAAACGGCATGATGACCTG
AATCGCAGCGGCATCAGCACCTTGTCGCTTGCGTATATATTTGCCCATGT
GAAACGGGGCGAGAGTTGTCATATGCTACGTTTAAATCAAACTGGTGAAC
TCACCCAGGGATTGCTGAACGAAACAAATTCTCATAATCCTTTAAGAATA
GCAGTTTCACGTACCACGCCAATTTGCAATAATGGTGAACTGCCGAA
UFO07887.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10581-RA | 587 | CG10581-RA | 8..578 | 5..575 | 2855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:31:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21033563..21034086 | 575..52 | 2620 | 100 | Minus |
| 3L | 28110227 | 3L | 21034146..21034196 | 55..5 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:31:33 has no hits.
UFO07887.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:46 Download gff for
UFO07887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10581-RA | 4..581 | 1..579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:20:12 Download gff for
UFO07887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10581-RA | 4..581 | 1..579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:30 Download gff for
UFO07887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10581-RA | 4..581 | 1..579 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:30 Download gff for
UFO07887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21033560..21034083 | 55..579 | 99 | <- | Minus |
| 3L | 21034147..21034199 | 1..54 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:20:12 Download gff for
UFO07887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21026660..21027183 | 55..579 | 99 | <- | Minus |
| arm_3L | 21027247..21027299 | 1..54 | 96 | | Minus |
