UFO07888.5prime Sequence
1135 bp (1023 high quality bases) assembled on 2011-07-14
> UFO07888.5prime
CAGTCGACATGGTTTTTGTAAAGAACTGGGATGATTTCGAGATTGCCGTC
GAGAACATGTACTTGGCCAATCCACAGAACTGTCGACTTACCATGAAATA
CGCGCACTCCAAGGGCCACATTCTGCTAAAAATGACGGACAACGTTAAGT
GTGTGCAGTACAAAGCGGAGAACATGCCGGATCTCAGAAAAATCGAGAAG
ATCACCAGCAACTTGGTGGGACACATGGCGTCCAAGGAAGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCT
GAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGA
GTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCA
GTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAA
CGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGC
GTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATT
GGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGA
CGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCA
CCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATC
GTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGA
AAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCACCGTCT
TTCATTGCCATACGAAATTCCAGATGAGCATTCATCAGCGGGCAGAATGT
GAATAAAGGCCGGATAAAAACTTGTGCTTATTTTTCTTTACGTCTTTAAA
AGCCGTAAATATCCAGCTGACGTCTGTATAGTAATTTGAGCAACTGACTG
AATGCTCAAATTTTTTTTACGGATGCCAATGGATATATTCAACGGGTGAA
TATCCAGTGAATTTTTCCATTAGTCTTCTTAGCCT
UFO07888.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:31:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Srp9-RA | 821 | CG8268-RA | 103..333 | 9..239 | 1155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:31:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7936475..7936615 | 9..149 | 705 | 100 | Plus |
| 3L | 28110227 | 3L | 7936679..7936770 | 148..239 | 460 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 00:31:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 808..875 | 123 | 68.1 | Plus |
UFO07888.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:47 Download gff for
UFO07888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp9-RA | 101..331 | 9..239 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:20:15 Download gff for
UFO07888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp9-RA | 103..333 | 9..239 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:31 Download gff for
UFO07888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp9-RA | 103..333 | 9..239 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:31 Download gff for
UFO07888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7936475..7936615 | 9..149 | 100 | -> | Plus |
| 3L | 7936681..7936770 | 150..239 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:20:15 Download gff for
UFO07888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7929575..7929715 | 9..149 | 100 | -> | Plus |
| arm_3L | 7929781..7929870 | 150..239 | 100 | == | Plus |
