UFO07889.5prime Sequence
1136 bp (1001 high quality bases) assembled on 2011-07-14
> UFO07889.5prime
CAGTCGACATGTCCGCTTCACACTTCAGGGAGCAGCTCGCCCTGTGCATT
ACCCTGGCAGTGCTCGCCGCTGCCAGTGGCGACTACCGGGCCAACATGTT
TCTCAATGGCCAATATCAAAACGGTATCAAGGATCAAAAGGAGAACAACC
TTTTAGTAAACCCCTCGACGAACGTGTTCCTCAACCACGCCATAATCAGC
AGGCAAGCGTCGCCGTTCCAGGGCCCAACCTATCTGCCGCCCAAGGAGTT
CCTGAAGTGCGCTCCCGGCCAGCAGTGCGTCCGCAGTGGTCAGTGCCTGA
ACGGATATTTCGCCCAGCAACTGCCCAAGATTCAAAACTGTGATCCGGAA
ACCACCGTTTGCTGTACTTACAGGCCGCCTCCCACCACCACAACAACAAC
CACTACTTCCGTGCCAGTGGCCAATTGTGCCTACGACTCCGACTGTGTGA
CTCCGGACAACTGCCGGAACGGCGAAATTAGCGCCATAAACTACGTAAAG
AAGCAAGGACCCAACCGCTGCCCTGCTCCTAATATATGCTGCCGCATACC
CTCGACCACGCTAACGGAGGATGGGTACATTTTCAACCTTCCGGAAAAGA
CCTTCCCGCTGCCGACGAAACCAGCAGTGCTCGCGATGCCCTCCACCCAG
GCGCCGTTCCGCCCGCAACCTACGACTGCTGTGCCAGCTTCTCGACCCAC
CATTGAGTATTTGCCGCCCTCCACCACACAGCATCCCAGTTACGAGAAAG
TCCAGACAAGCCGACGGCCAGTCTACTTGCCACCTTCCCCGGCCACTGAG
TCGGCCAGCAGTCTCATCCCAAAAATTAGGCCGAGGCCGGAGCCACGCCC
CCAGCCGACGCGCCGTCCAACGAATGAGTACCTGCCGCCTGCGGCCGCTA
ACGAAATCCCTCGCTTCGAGCCTGACGCGCTCGCAGCCATCAAACCAGAG
CATCTACCGCGGAGAGGACAGCTGTCGCTCAGATCTTTCCACTCCCAGCA
GCATGTTCAAAACTTTGCAGTGCGCCCTCAGCTAGTGTGCACCTCTGAAC
TTCTGCACGCATCGGAAGTGCTTTCTGAACCCGGTAAGCTTTCTCCATGA
AACGAGCTCGATGTCCGTTTACGACTGTTGGCAACG
UFO07889.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:31:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scaf-RA | 3390 | CG11066-RA | 455..1546 | 8..1078 | 4905 | 97.7 | Plus |
| scaf-RB | 3043 | CG11066-RB | 108..1199 | 8..1078 | 4905 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:31:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5680030..5680517 | 990..510 | 2130 | 98.2 | Minus |
| 2R | 25286936 | 2R | 5687676..5688003 | 335..8 | 1640 | 100 | Minus |
| 2R | 25286936 | 2R | 5684804..5684977 | 509..336 | 870 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:31:41 has no hits.
UFO07889.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:48 Download gff for
UFO07889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scaf-RA | 448..1421 | 1..969 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:20:18 Download gff for
UFO07889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scaf-RB | 101..1074 | 1..969 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:33 Download gff for
UFO07889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scaf-RB | 101..1074 | 1..969 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:33 Download gff for
UFO07889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5680053..5680517 | 510..969 | 98 | <- | Minus |
| 2R | 5684804..5684977 | 336..509 | 100 | <- | Minus |
| 2R | 5687676..5688008 | 1..335 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:20:18 Download gff for
UFO07889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1572309..1572482 | 336..509 | 100 | <- | Minus |
| arm_2R | 1567558..1568022 | 510..969 | 98 | <- | Minus |
| arm_2R | 1575181..1575513 | 1..335 | 99 | | Minus |
