UFO07892.5prime Sequence
1127 bp (1011 high quality bases) assembled on 2011-07-14
> UFO07892.5prime
CAGTCGACATGAGTCTGTACAACTTCAAAAAGATCATGGTGGTTCCGCCA
GCAAAGGACTTCATCGACATTATGCTGTCGAAGACACAGCGCAAGACCCC
GACGGTGGTCCACAAGGGCTACAAAATATCCAGAATCCGGGCATTCTACA
CGCGCAAGGTGAAGTACACGCAGCAGAACTTCCACGATCGCTTGTCGCAG
ATCATTCAGGACTTTCCCAAACTGGACGACGTGCATCCTTTCTACGCCGA
CTTGATGAACGTGCTGTACGACAAGGATCATTACAAGCTGGCGCTGGGTC
AACTCAACACAGCCAGGCATTTGGTGGACAATGTGGCCAAGGACTACGTG
CGCCTGCTGAAGTACGGTGACTCGCTGTATCGCTGCAAACAGTTGAAGAA
AGCTGCCCTGGGTCGCATGGCCACCATTATGAAGCGACAGGCCTCCAATC
TGACGTATCTGGAGCAAGTGCGTCAGCATCTCTCGCGTCTGCCCACCATC
GATCCCTATTCGCGTACCATCATCATCTGCGGTTTCCCCAACGTGGGCAA
GTCCTCGTTCATCAACAAGATCACCCGCGCCGATGTGGAAGTGCAGCCCT
ACGCCTTCACCACGAAATCCCTGTACGTGGGACACACAGACTACAAATAT
CTGCGCTGGCAGGTCATTGACACACCCGGCATCCTGGATCATCCCCTGGA
AGAGCGCAATGTGATCGAAATGCAAGCCATTACTGCCTTGGCTCATTTGC
GCGCCTGCGTCCTGTACTTCATGGATATCTCCGAGCAGTGCGGACACTCC
TTGGAGGAACAGGTCAAGCTGTTCGAGAGCATCAAGCCTTTGTTTACAAA
CAAACCCCTCATCCTGCCATCAACAAGATCGATATTCTAACACCAGAGGA
TCTGCCAGAGGAGCGACGAGCGATATCACCAAACTACAGGAGACAGACAT
TCCCGTATGCTCATGTCCACCGTACAGGAAACCGGTGTCATGAGTGAAAA
CCGAGGCATGGTGGGCGTTTGCCTCTCGTACGGTGTGAACAGAAGAATGC
GCCACAAGAAGGTGGACAACATCTGACGCCTGCATGGTGGCATGCCAGCG
CGCGCGAGAGTAGACAAACTTCTGAAC
UFO07892.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:27:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Non1-RB | 2276 | CG8801-RB | 104..1223 | 9..1122 | 5040 | 97.7 | Plus |
| Non1-RA | 2181 | CG8801-RA | 104..1223 | 9..1122 | 5040 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:27:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9397367..9398114 | 1073..332 | 3115 | 96.5 | Minus |
| 2R | 25286936 | 2R | 9398184..9398460 | 331..55 | 1385 | 100 | Minus |
| 2R | 25286936 | 2R | 9398583..9398631 | 57..9 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:27:08 has no hits.
UFO07892.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:03 Download gff for
UFO07892.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8801-RA | 112..1210 | 1..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:49 Download gff for
UFO07892.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8801-RA | 96..1194 | 1..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:34 Download gff for
UFO07892.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Non1-RA | 96..1194 | 1..1091 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:34 Download gff for
UFO07892.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9397349..9398114 | 332..1087 | 97 | <- | Minus |
| 2R | 9398184..9398458 | 57..331 | 100 | <- | Minus |
| 2R | 9398584..9398639 | 1..56 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:49 Download gff for
UFO07892.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5284854..5285619 | 332..1087 | 97 | <- | Minus |
| arm_2R | 5285689..5285963 | 57..331 | 100 | <- | Minus |
| arm_2R | 5286089..5286144 | 1..56 | 92 | | Minus |
