UFO07908.5prime Sequence
895 bp (823 high quality bases) assembled on 2011-07-17
> UFO07908.5prime
CAGTCGACATGGCAAATCGCGCAAATCGTCATGCTGCTCGCACCGAGGAT
TCGGATAATACCATTAACTACGTCCAATGCGACGGACTGGCCGTCATGAA
GATGGTGAAGCACTGCCATGAGGAGTCGAGCAACATGGACCTCGCCCAGG
GCGCCCTGCTCGGTCTGGTGGTAGACAAGTGCCTGGAGATCACCAACTGC
TTCCCGTTTCCCAAGAGCGGCGATGAGACCATGGACGAGGAGATGTACCA
GCTGACCGTGATGCGTCGCCTGCGTCGCGTCAACGTAGATCATCTCCATG
TGGGCTGGTACCAGAGCTCCGACGTGGGCAACAGCCTGTCAATGGCTCTG
TTGGAATCGCAGTACCACTACCAGACCAGCATTGAAGAGTCCGTCGTTGT
CGTCTACGATACGCAGAAGTCATCCCGCGGATTCCTGTGCTTGAAGGCCT
ACCGCCTTACTCCGCAGGCCATTCAGATGTACAAGGATGGCGACTTCACT
CCAGAGGCATTCCGCACCCTGAAGGTCGGCTACGAGAACCTCTTCGCCGA
GATTCCCATTGTGATCAAGAACTCGCCGCTGACCAACATTATGATGAGCG
AGCTGAACGAGCTGCTGCCCGAGGACAAGGGGCACAACTTCCTGGACCTG
GGCACCGCCACCGTATTGGACAACCAAATGCGTAGCCTGATCGAGCGCGT
CGACGATTTGTACCAGGAGGCAGTGCGCTATAACAAGTACCAGCAGGTGG
TCTTCAAGCAGGATACGGAAGAAGCACCGGTGCTCTGTCTAAGCTGGGCC
GCCGAGAACTCGTTCGCACATCGAAGAAGAGCCCCACGGGTGTCAGAGGA
GGAATTGATCAACAGTTCCGCCCCATGACTGCGCCCTACCGCCTG
UFO07908.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:32:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-3p40-RB | 1182 | CG9124-RB | 40..930 | 3..895 | 4145 | 98.1 | Plus |
| eIF-3p40-RA | 1496 | CG9124-RA | 354..1244 | 3..895 | 4145 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:32:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5051636..5052315 | 768..89 | 3370 | 99.7 | Minus |
| 2L | 23513712 | 2L | 5052654..5052741 | 90..3 | 425 | 98.9 | Minus |
| 2L | 23513712 | 2L | 5051445..5051560 | 895..780 | 225 | 87.3 | Minus |
Blast to na_te.dros performed 2014-11-27 00:32:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 8315..8386 | 640..709 | 130 | 68.5 | Plus |
UFO07908.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:53 Download gff for
UFO07908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-3p40-RB | 51..942 | 1..895 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:20:35 Download gff for
UFO07908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-3p40-RA | 353..1244 | 1..895 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:47 Download gff for
UFO07908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-3p40-RA | 353..1244 | 1..895 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:47 Download gff for
UFO07908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5051633..5052314 | 90..771 | 99 | <- | Minus |
| 2L | 5052655..5052742 | 1..89 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:20:35 Download gff for
UFO07908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5051633..5052314 | 90..771 | 99 | <- | Minus |
| arm_2L | 5052655..5052742 | 1..89 | 97 | | Minus |
