UFO07913.5prime Sequence
1134 bp (1014 high quality bases) assembled on 2011-07-17
> UFO07913.5prime
CAGTCGACATGGAAAGGAAACCAAGTATACCAAAAATCAGGCAGGTCAGC
AGTCTTGGAAGTCAATTCACTTTTCCCAATATAGCGGATCTATTTTGCAA
TGCCGTCTCCATTCACAATGACTATTGTAAATTGCATTTTATAAACGAAA
AGTTGCAATTCCATTTAAATGGAATGTTGGAAAGTAAAGATGCTTCAGCG
ATTTACTATTTTAAGCAACATATTATTCTAAACTCGGATCAACTGGAATC
TGCATCCAAAAATTATGACATGACCTTTCATACAATAATGAGCGACGTTG
ACCGATTTCGGTACCGACAATGTAACGACATCTTGGCCCCTGGAACAAAT
TTTTCCGTTTTAAAGTCAAAATATAATATCATTAGAAATGACATTCATGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACC
GAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTA
TCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCA
CTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGC
CATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTG
TCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTT
GTCCATATTGGCCCACGTTTAAATCAAACTGGTGAAACTCACCCAGGGAT
TGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCC
AGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTG
CCGGAAATCGTCGTGTATCACTCCAGAGCGATGAAAACGTTTCAGTTTGC
TCATGGAACGGTGTACCAGGTGACACTATCCAATATCACCAGCTCCACGT
CTTTCATGCATACGAAATCGGATGGCAATCATCAGCGGGCAGATGTGAAT
AAGGGCCGATAACCTTGGCTAATTCCTACCGCTT
UFO07913.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:32:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17490-RF | 2953 | CG17490-RF | 1756..2145 | 9..398 | 1950 | 100 | Plus |
| CG17490-RG | 2877 | CG17490-RG | 2376..2765 | 9..398 | 1950 | 100 | Plus |
| CG17490-RE | 2315 | CG17490-RE | 1814..2203 | 9..398 | 1950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:32:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22540043..22540324 | 9..290 | 1410 | 100 | Plus |
| 2L | 23513712 | 2L | 22540377..22540485 | 290..398 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:32:24 has no hits.
UFO07913.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:56 Download gff for
UFO07913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17490-RE | 1754..2151 | 9..407 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:20:45 Download gff for
UFO07913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17490-RA | 430..827 | 9..407 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:57 Download gff for
UFO07913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17490-RE | 1814..2211 | 9..407 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:57 Download gff for
UFO07913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22540043..22540324 | 9..290 | 100 | -> | Plus |
| 2L | 22540378..22540485 | 291..398 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:20:45 Download gff for
UFO07913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22432775..22433056 | 9..290 | 100 | -> | Plus |
| arm_2L | 22433110..22433217 | 291..398 | 100 | == | Plus |
