UFO07916.5prime Sequence
1121 bp (1004 high quality bases) assembled on 2011-07-17
> UFO07916.5prime
CAGTCGACATGTTCCCGCAACGCAGCTCGGAGCTGTACCGCACTCCGGTG
ACCCACCAGCCTCCGCCGGCACTGGAGCTGGCCGGGAATCTGGAGTACCC
GAACCTCAACATTGCGGACCTAAACGCGCGATTGGAAAACCTTTCGCCGC
GACTGCACGACTGCTGGGACAGCATCGCTATCAATGATCACAACCACCTG
GCCCTGGCCACAAACCGACGCGAAGGACGCCAATGGTGGGGCATGTTGTT
CGGCTACGGACGCGACCAGATGCACCACATGAGCGTGGACTCGGCGAACT
TCAAGCTGCAGGCGGAGCACACGGTGAACATTGTGCGCTACGCTGAGGAT
GATTTCCTACTGGTGGCCCTTGGGGATACCCGACTCCAGGCCTGGTCCAC
ATACTCCAAGGTGCGAGATTCTCAGTCGCCATACTGCCTCTTCCTCGTGG
GCGAGTCCAGTGCGCATCCCACACCCATCAGCCAACTGAGCGTCTTCAAG
GCGGATCCCCGCACTGCCGTTTCGGGCTCAGCGGACAGTACCCTCAATGT
CTGGGATCTCTCGGGCGCCGATATGGTGAGCACCTACAGATCGCGCTCCT
CGCATACCGACAAGTTGACTGGCCTGGCCACACCCGCAGCTTCAGTCGAT
AAATTTGTGACCTGTGATCGTGGCGGCTGTGCCCGCCTTTGGGATGTCCG
GGCAGCGGCTCCATCTTCCACGTGCCTCTATGCGGATGCCAGCCACGTGC
TGAGCTTCACCAGTGCCGCCTGGGCAGCTGCCTCGGAGCTGCAGGGTGAC
AATCACATCTATCTCGGGGACTACGACGGCAAAGTTCATACTCTGGACAT
TCGAGTGCCACGAAAACTGGCGGAACCAGGGAATACTTCGACAAGGGCCA
TGTCGCCCAGTTATTAATCAATGGGCCCATCTGGCTGCGATGAGCATTTG
CCCGCCTCGTGAAAGTGCCAATGTGCAGCGGGCATGAGTCATCTACACGC
ACCAGGACACCCATCTCGCCTACTGATGCGTTGGACGGATGAAGCACCTC
ATCACAATGGAATGGCCGCAATGTGACGCACGCGATCAAGACAAGCTTCA
GAAACATTCGTTTGGGCGCGC
UFO07916.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:32:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vls-RA | 1310 | CG10728-RA | 82..1181 | 9..1089 | 4960 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:32:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20065057..20065598 | 550..9 | 2695 | 99.8 | Minus |
| 2L | 23513712 | 2L | 20064624..20065001 | 925..549 | 1825 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:32:31 has no hits.
UFO07916.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:00 Download gff for
UFO07916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vls-RA | 70..1145 | 1..1061 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:20:49 Download gff for
UFO07916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vls-RA | 74..1149 | 1..1061 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:01 Download gff for
UFO07916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vls-RA | 74..1149 | 1..1061 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:01 Download gff for
UFO07916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20064625..20065001 | 549..924 | 99 | <- | Minus |
| 2L | 20065059..20065603 | 1..548 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:20:49 Download gff for
UFO07916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20064625..20065001 | 549..924 | 99 | <- | Minus |
| arm_2L | 20065059..20065603 | 1..548 | 99 | | Minus |
