Clone UFO07920 Report

Search the DGRC for UFO07920

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:79
Well:20
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG33203-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO07920.5prime Sequence

1140 bp (1008 high quality bases) assembled on 2011-07-17

> UFO07920.5prime
CAGTCGACATGGACACCGCTGCCGCCGCCGCCGCTGCAGTCGCCGTTGAC
CTGAAACCCGATCAGCAGCTGCTGGGCAGCTCCACAAAGACCAGGATTGG
AGGAGGAAGCACTGGATGCGACTGCCTGGGCAGCACCGTGGAGACCATGT
CGCTGACTCCGCCACCCACGCCGCCTACACGCGCCATTGATGGCCAAGTG
GAAGCGTGTGGAGCTCCAGGCATCCCAAGTGCTCCCGCTGAGACCCATTC
CCTGAACGGAATGAAAGGCAAGGAGGCGCCGGAAACAGCAACCGCAATAG
CATCCACTGAACCCACTCAGCCGGATACTCCCGCCACATCATCCACGTCT
TCCGCCAAAGCTTCCACCACGCCAACGTCTGCCTTGCTGGGATCGGGATC
AGCAACAGGCTCGGTAGTCCCTGCAGCGGAGCATCCACCAGCTGCAGCTG
CATCGGTGCCTAGTAGCAGTGCCAGCAACTCCAGCAGCAGCAGCAGCAGT
TCCGGATCCGACGGGAATGTGGTCCAACTGCTGCCCTGGCAGGACATGCC
CACGTATCTTCAGTTCAACCCCTACGTACTCCGGGGTTACAGACCGCTTC
AGACCTTCAAAGGATGCCTCCTCAGCCTGTTCTACTGGCACAACGAGTCC
ATCAACATACTGACACATGCCATACCCATCTTCTACATCCTGGCCATCGT
GCCCGGACTGATGCCCTGGGACAGTGGCTACAAGTTCCTGTCCTTCTGCC
ACGTCTTCGGATCGGTGGCTCCCTGGTGCGGCAGCTTCGTCTACCACCTT
TTCATGAACATCGAGAAAGGGCGAGAACGTCTACTACACGCTGCTCAAGT
TGGACATGGTCGGGATCTGGGTGAGCCAGAGCTTTGGTGCCCTGCCCCTG
GTCACAGCCACCACTCTGTGCTTCCCCCCCGTGCTCAAGTGGCTCATTAT
TGTTTCCTACTGCGTGCTCTCGCTGTGGGGGCTCTACAAGCTCTAACTGC
CAGCTCACCCTGGCAGCGTCGCTTGTGCTTCGCCTGCCCTTCGCCATGCC
CCTCGATTCTGACTCCTGCGCATCCGGTGGAATGGTGGGCGGCAGTCCAT
GGCCATTCCAATGTTCTAACTGCAGACGGCGCTCTCAATA

UFO07920.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG33203-RD 3228 CG33203-RD 487..1621 8..1140 5305 98.3 Plus
CG33203-RF 3243 CG33203-RF 487..1606 8..1125 5290 98.6 Plus
CG33203-RE 3243 CG33203-RE 487..1606 8..1125 5290 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28886256..28886917 669..8 3310 100 Minus
3R 32079331 3R 28875049..28875268 889..669 1040 99.1 Minus
3R 32079331 3R 28872717..28872821 990..886 510 99 Minus
3R 32079331 3R 28872549..28872661 1097..986 330 93.9 Minus
Blast to na_te.dros performed 2014-11-27 00:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6757..6928 276..447 120 55.2 Plus

UFO07920.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:03 Download gff for UFO07920.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33203-RD 478..1595 1..1118 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:20:54 Download gff for UFO07920.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33203-RD 482..1599 1..1118 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:06 Download gff for UFO07920.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33203-RD 482..1599 1..1118 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:06 Download gff for UFO07920.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 28872527..28872657 991..1118 91 <- Minus
3R 28872717..28872820 887..990 99 <- Minus
3R 28875052..28875267 670..886 99 <- Minus
3R 28886256..28886922 1..669 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:20:54 Download gff for UFO07920.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24698249..24698379 991..1118 91 <- Minus
arm_3R 24698439..24698542 887..990 99 <- Minus
arm_3R 24700774..24700989 670..886 99 <- Minus
arm_3R 24711978..24712644 1..669 99   Minus