UFO07920.5prime Sequence
1140 bp (1008 high quality bases) assembled on 2011-07-17
> UFO07920.5prime
CAGTCGACATGGACACCGCTGCCGCCGCCGCCGCTGCAGTCGCCGTTGAC
CTGAAACCCGATCAGCAGCTGCTGGGCAGCTCCACAAAGACCAGGATTGG
AGGAGGAAGCACTGGATGCGACTGCCTGGGCAGCACCGTGGAGACCATGT
CGCTGACTCCGCCACCCACGCCGCCTACACGCGCCATTGATGGCCAAGTG
GAAGCGTGTGGAGCTCCAGGCATCCCAAGTGCTCCCGCTGAGACCCATTC
CCTGAACGGAATGAAAGGCAAGGAGGCGCCGGAAACAGCAACCGCAATAG
CATCCACTGAACCCACTCAGCCGGATACTCCCGCCACATCATCCACGTCT
TCCGCCAAAGCTTCCACCACGCCAACGTCTGCCTTGCTGGGATCGGGATC
AGCAACAGGCTCGGTAGTCCCTGCAGCGGAGCATCCACCAGCTGCAGCTG
CATCGGTGCCTAGTAGCAGTGCCAGCAACTCCAGCAGCAGCAGCAGCAGT
TCCGGATCCGACGGGAATGTGGTCCAACTGCTGCCCTGGCAGGACATGCC
CACGTATCTTCAGTTCAACCCCTACGTACTCCGGGGTTACAGACCGCTTC
AGACCTTCAAAGGATGCCTCCTCAGCCTGTTCTACTGGCACAACGAGTCC
ATCAACATACTGACACATGCCATACCCATCTTCTACATCCTGGCCATCGT
GCCCGGACTGATGCCCTGGGACAGTGGCTACAAGTTCCTGTCCTTCTGCC
ACGTCTTCGGATCGGTGGCTCCCTGGTGCGGCAGCTTCGTCTACCACCTT
TTCATGAACATCGAGAAAGGGCGAGAACGTCTACTACACGCTGCTCAAGT
TGGACATGGTCGGGATCTGGGTGAGCCAGAGCTTTGGTGCCCTGCCCCTG
GTCACAGCCACCACTCTGTGCTTCCCCCCCGTGCTCAAGTGGCTCATTAT
TGTTTCCTACTGCGTGCTCTCGCTGTGGGGGCTCTACAAGCTCTAACTGC
CAGCTCACCCTGGCAGCGTCGCTTGTGCTTCGCCTGCCCTTCGCCATGCC
CCTCGATTCTGACTCCTGCGCATCCGGTGGAATGGTGGGCGGCAGTCCAT
GGCCATTCCAATGTTCTAACTGCAGACGGCGCTCTCAATA
UFO07920.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:32:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33203-RD | 3228 | CG33203-RD | 487..1621 | 8..1140 | 5305 | 98.3 | Plus |
CG33203-RF | 3243 | CG33203-RF | 487..1606 | 8..1125 | 5290 | 98.6 | Plus |
CG33203-RE | 3243 | CG33203-RE | 487..1606 | 8..1125 | 5290 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:32:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28886256..28886917 | 669..8 | 3310 | 100 | Minus |
3R | 32079331 | 3R | 28875049..28875268 | 889..669 | 1040 | 99.1 | Minus |
3R | 32079331 | 3R | 28872717..28872821 | 990..886 | 510 | 99 | Minus |
3R | 32079331 | 3R | 28872549..28872661 | 1097..986 | 330 | 93.9 | Minus |
Blast to na_te.dros performed 2014-11-27 00:32:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6928 | 276..447 | 120 | 55.2 | Plus |
UFO07920.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:03 Download gff for
UFO07920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33203-RD | 478..1595 | 1..1118 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:20:54 Download gff for
UFO07920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33203-RD | 482..1599 | 1..1118 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:06 Download gff for
UFO07920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33203-RD | 482..1599 | 1..1118 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:06 Download gff for
UFO07920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28872527..28872657 | 991..1118 | 91 | <- | Minus |
3R | 28872717..28872820 | 887..990 | 99 | <- | Minus |
3R | 28875052..28875267 | 670..886 | 99 | <- | Minus |
3R | 28886256..28886922 | 1..669 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:20:54 Download gff for
UFO07920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24698249..24698379 | 991..1118 | 91 | <- | Minus |
arm_3R | 24698439..24698542 | 887..990 | 99 | <- | Minus |
arm_3R | 24700774..24700989 | 670..886 | 99 | <- | Minus |
arm_3R | 24711978..24712644 | 1..669 | 99 | | Minus |