UFO07921.5prime Sequence
1115 bp (999 high quality bases) assembled on 2011-07-17
> UFO07921.5prime
CAGTCGACATGGCTTTCACAATGCAAACCGGGGATCTGAAGAAGCTGAAG
TACTTCATCGACTTTGCGCTTGAGAATCCCACCTTCTTGAACATGCCGCA
GCTGCAGTTCGTCAAAGATTTCGTGGAGAAGTTTGGTGGCACGGTGCCGC
CTGGCCAATTCAACGGTGGCAGCGCCGGAGGCAAGTGCCCATTCGGCGGT
GTTGCTGGTGCCAAGGCCAACGAGCCGGCCAATGCCCCCGAGGATAGCGA
GGACGAAAAGTCCCTCTCCGATCCTGAGTCGGACGTGGAGCTGGACATGG
AGGGTGTGATCGAGGCGGACAGCGACCCCGCCCAACCCATGGGCAACTAC
AGCAAGAAGGCCACCGAAGAGGAGGTGGAGCAGGCGAGCGAGCTGCGCGC
CCAGGCGGCCTCCGCTTACGGCCAGCAGAAGTTCGACGAGGCCATCGCCT
TGTACACCAAGGCCATTGAACTGAGCCCGGGTAATGCCCTTTTCCACGCT
AAGCGTGGTCAGGCCTTCCTCAAGCTGAAGAAGCCGAATGCCTGCATTCG
GGACTGCGACGTGGCGCTGGAACTCAACTCGGATTTGGCGGCTGGCTACA
AGTTCAGGGGACGCGCCCGTCGCCTCCTCGGAGATTTTGAGCTGGCTGCC
CATGATTTGCGCCAAGCATGCAAGCTGGACTTTGACGAGGAGACAGACGA
GTGGCTAAAGGAGGTCACTCCGAATGCCAAGAAAATCGAGCAGCATCGCT
TGAAGCATGAGCGTCGCCAGGCAGAGCGTAAGATCAAGGAACGCCAGCGG
GATCAGAGGCGCGCACGTAAGGAGCAGGAAAAGCACAATGCCAGCTCTGG
TGGATCATCTGGAGATTTTCCGTGGGAATCCTGGTAACGGAAATATGTCT
GATATACTGGGCGCCATGTCAGATCCCGAGTGTCAGCCGCCATTCAGACA
TTTTGTCAATCCGGGTAACATCACAAAGTACGCGTCGAACCCGAGGATAT
ACACCTTATCAGAAGATGGTGCCCGGTGAGATGTTGGGTGCCTGCCTTTG
ACCAGCGGGTGAAAAGGCTGAAGCCGAGGGACTTAGCCTCAAGGATTCGC
CGACTTCGTCGATGA
UFO07921.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:32:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HIP-RA | 2050 | CG32789-RA | 98..1218 | 9..1115 | 5090 | 97.8 | Plus |
| HIP-R-RD | 2006 | CG2947-RD | 64..1184 | 9..1115 | 5075 | 97.7 | Plus |
| HIP-R-RB | 2065 | CG2947-RB | 123..1243 | 9..1115 | 5075 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:32:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3790755..3791402 | 303..947 | 3080 | 99.1 | Plus |
| X | 23542271 | X | 3799838..3800485 | 303..947 | 3080 | 99.1 | Plus |
| X | 23542271 | X | 3790164..3790336 | 9..181 | 865 | 100 | Plus |
| X | 23542271 | X | 3799247..3799419 | 9..181 | 865 | 100 | Plus |
| X | 23542271 | X | 3790416..3790541 | 181..306 | 630 | 100 | Plus |
| X | 23542271 | X | 3799499..3799624 | 181..306 | 630 | 100 | Plus |
| X | 23542271 | X | 3791477..3791603 | 947..1070 | 260 | 85.8 | Plus |
| X | 23542271 | X | 3800560..3800686 | 947..1070 | 260 | 85.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:32:44 has no hits.
UFO07921.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:03 Download gff for
UFO07921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HIP-RA | 91..1219 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:20:57 Download gff for
UFO07921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HIP-RA | 91..1219 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:09 Download gff for
UFO07921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HIP-RA | 89..1217 | 1..1114 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:09 Download gff for
UFO07921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3790155..3790336 | 1..181 | 97 | -> | Plus |
| X | 3790417..3790538 | 182..303 | 100 | -> | Plus |
| X | 3790756..3791402 | 304..947 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:20:57 Download gff for
UFO07921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3684188..3684369 | 1..181 | 97 | -> | Plus |
| arm_X | 3684450..3684571 | 182..303 | 100 | -> | Plus |
| arm_X | 3684789..3685435 | 304..947 | 99 | -> | Plus |
