UFO07922.5prime Sequence
1137 bp (1019 high quality bases) assembled on 2011-07-17
> UFO07922.5prime
CAGTCGACATGGCTTCTGGTGTAACTGTGTCTGATGTCTGCAAGACTACA
TACGAGGAAATAAAGAAGGACAAAAAGCATCGCTATGTCATCTTTTACAT
TCGCGATGAAAAGCAGATTGATGTGGAGACTGTGGCAGATCGCAACGCCG
AGTACGACCAGTTTCTAGAAGATATCCAGAAATGCGGACCTGGAGAGTGC
CGGTACGGACTGTTCGATTTCGAGTACATGCACCAGTGTCAAGGCACCTC
TGAGAGTTCAAAGAAGCAAAAGCTGTTCCTTATGTCGTGGTGTCCCGATA
CTGCCAAGGTCAAGAAGAAGATGTTGTACTCCAGCTCCTTCGATGCTCTC
AAGAAGTCGCTCGTGGGCGTCCAAAAGTATATACAAGCCACTGATCTTTC
CGAAGCCTCCCGGGAAGCCGTCGAGGAGAAACTCCGGGCCACCGACCGCC
AAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGA
TCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCT
GCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGG
AAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCAC
CTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGA
AGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAG
GATTGGCTGAGACGAAAACATATTCTCAATAAACCCTTTAGGAAATAGGC
CAGGTTTTCACCGTACACGCACATCTGCGAATATATGTGTAGAACTGCGA
ATCGTCGTGTATCACTCAGAGCGATGAAACGTTTCAGTTTGCCTCATGAA
ACGTGTACAGGGTGACACTTATCATATCACAGCTCACGCCTTTCATGCAT
CGATCGATGAACTCACAGCGCAGACGTGAAATTAGGG
UFO07922.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:32:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tsr-RA | 735 | CG4254-RA | 138..581 | 9..452 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:32:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24044989..24045183 | 205..11 | 975 | 100 | Minus |
| 2R | 25286936 | 2R | 24044607..24044752 | 452..307 | 730 | 100 | Minus |
| 2R | 25286936 | 2R | 24044812..24044920 | 310..202 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:32:14 has no hits.
UFO07922.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:54 Download gff for
UFO07922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tsr-RA | 161..618 | 1..459 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:20:40 Download gff for
UFO07922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tsr-RA | 130..587 | 1..459 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:51 Download gff for
UFO07922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tsr-RA | 130..587 | 1..459 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:51 Download gff for
UFO07922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24044992..24045190 | 1..202 | 97 | | Minus |
| 2R | 24044607..24044750 | 309..452 | 100 | <- | Minus |
| 2R | 24044814..24044919 | 203..308 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:20:40 Download gff for
UFO07922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19932130..19932273 | 309..452 | 100 | <- | Minus |
| arm_2R | 19932337..19932442 | 203..308 | 100 | <- | Minus |
| arm_2R | 19932515..19932713 | 1..202 | 97 | | Minus |
