UFO07923.5prime Sequence
1180 bp (1081 high quality bases) assembled on 2011-07-17
> UFO07923.5prime
CAGTCGACATGTCCCAGATGGGCGGCACATGCTTGTACGATGAGCCCGAA
ATCATGGAGGAGTTCATCAGCTGTTATCAGTATTTCACCGCCCTGTGGGA
CAGCAGCAGTCCCGATTATCTATCGAAACAGAAAAAGGAGCCCGGCTATC
AGGAGCTATTGAAGATACTGCGACGCGTTAATAGCAACTGTTCGATTCAG
GATGTTAAGCGAAAGATAAACTCGCTGCGTTGCTGCTATCGTCGTGAATT
CAAAAAGGTACAGGAATCGGTCAATGGCTACCAGACGCGTCTCTGGTGGT
TTCATCTGATGGATTTCCTCAAGCCGGTACTCAACATACAATCGCCGGCC
AGGGTGAAATCCGAGAACGTGGACGATAGTCTCGACGAGACCAGCATTCA
GGATGTTGACATTATGTCTGATGCCTTTCCACACGAAGAGGATATGCTAC
GTCTTGATGCCGTGGGTGATGGCGATGTTGAACCGGAACCCGAGCCTGAT
AACGATCCCGAATTGGATAACATGGATGATCATGTTGATGATTATCGTAA
CAATTCATCGGCTGGGAGCATTAAGAACAATGGCTATCAGCAGCACACCG
TATCTTCGCACCAGCAGCATAACGGTGAATCGCAGACTTCGGATAAATCC
GGACGTCGCATCCGTAACCGACGAAGACGCAGTAGCAATGACACCGATTA
CGTTGAAGCGGCGAGAAAGCGTAGAAATGTGGAGACTTCGAATAGAGATA
GAGACTGGCATAGAGAGCGGGATAGGGAGCGAGACAGAAAGCATGAAAGC
GACAGCGAGTACGAGTGCGAGCTGATCGGAAAACGGATGGCCAGCCACTT
CCGGCGTATGCGTCCGGATCAGCGACTTTTCGCCGAACGGATCATCAGCG
AGGTGTTGGTCTATGGCCGAATGAATCGCCTTTCGTTCGAGACCCAATTT
AGTATGGGTCATAAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGGGGGC
CCAGGTAAGTGGTCATAATCATATCATAATCATAATCATAATCACACTAG
CCTAGAGATCTGGTCATGACTATGCTGAATCTCACCATAAAAACGGCCGG
CGGCACGAGCGTCTGAACAATCGAGTGAATTCGAGTCATACTGAATCTTC
ACGGATTCAAGCGAGTCTGGATATCCTAAA
UFO07923.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:32:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4004-RE | 2237 | CG4004-RE | 346..1302 | 9..965 | 4755 | 99.8 | Plus |
| CG4004-RD | 1985 | CG4004-RD | 94..1050 | 9..965 | 4755 | 99.8 | Plus |
| CG4004-RA | 3403 | CG4004-RA | 94..1050 | 9..965 | 4755 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:32:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12746864..12747432 | 397..965 | 2815 | 99.6 | Plus |
| X | 23542271 | X | 12744557..12744950 | 9..402 | 1970 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:32:17 has no hits.
UFO07923.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:22:55 Download gff for
UFO07923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4004-RA | 92..1052 | 9..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:20:41 Download gff for
UFO07923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4004-RA | 94..1054 | 9..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:53 Download gff for
UFO07923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4004-RA | 94..1054 | 9..970 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:53 Download gff for
UFO07923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12744557..12744949 | 9..401 | 100 | -> | Plus |
| X | 12746869..12747432 | 402..965 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:20:41 Download gff for
UFO07923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12638590..12638982 | 9..401 | 100 | -> | Plus |
| arm_X | 12640902..12641465 | 402..965 | 99 | == | Plus |
