UFO07925.5prime Sequence
1146 bp (1035 high quality bases) assembled on 2011-07-17
> UFO07925.5prime
CAGTCGACATGAATTTACCAGCGAAAATGGACGTGGAAAAGGATAAGCTT
CGCCAGATGCACTGCGAATTCAATCCCTTGTCGCGTTGCGACGGATCCGT
GATGTACAGCCAGGGTGCTACAGGTCTCATAGGCGCAGTTCTCGGCCCCA
TCGAGGTGAAGACCCAAAATCTGAGCATAGATGGCAGCTACTTGGAGTGT
AACTACCGACCAAAAGCGGGCCTGCCGCAGGTTACCGATCGGATTCGGGA
GGCGGCCATTCGGGATGTGCTGGAACTGGCCCTCCTGTCGGAGGCTCATC
CGCGCTCCAAGATGTCCGTGCAGATCCAGGAGCTGGAAGATCGTGGCAGT
ATTGATGCCTGCGCCGTAAATTGCGCCTGCCTAGCCATGCTCATCGGAGG
CCTGCCTTTAAAGTATAGCTTTGCGGCTGTCCACGCCATCATCAACGAGC
AGGGCGAGTATGTGCTAGATCCGGACCAAAGTGAAACCCTCCACCAGCGC
GCCAGTTTTACATTCGCCTTTGATTCTGTGGAAGGAAACCTTCTGTTGAT
CCAGACAAAGGGCTCTTTCAAAATAGCCCAGTTCAATGATATTGAGTGCC
TATGCCTGGCTGCCAGTGCCGAGATCTTTCAGTTCTATCGCAACCAGGTT
GCAAAGTATCATGGCAGGAGTGAGGCGACGGCTAAGAAGGAGGACGTCAA
TGAGACGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGG
AGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCG
GCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTA
CTGGATCTATCAACAGAGTCCAAGCGAGCTCGATATCAATTACGCCCGCC
CTGCCACTCATCGCAGTACTGTGTAATTCATTAGCATTCTGCCGACATGG
AAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCCATCAGCA
CCCTTTGTCGCCTTGCGTATAAATATTTGCCATGTGAAACGGGGGCCCGA
AAGTTTGTCCATTTGCCAGTTAATCAAACTGTGTGGTAACTCTCCC
UFO07925.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:32:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rrp46-RA | 819 | CG4043-RA | 73..771 | 9..707 | 3450 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:32:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10413838..10414194 | 351..707 | 1755 | 99.4 | Plus |
| 3R | 32079331 | 3R | 10413543..10413779 | 114..350 | 1170 | 99.6 | Plus |
| 3R | 32079331 | 3R | 10413373..10413480 | 9..116 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:32:57 has no hits.
UFO07925.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:05 Download gff for
UFO07925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp46-RA | 73..778 | 9..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:02 Download gff for
UFO07925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp46-RA | 73..778 | 9..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:16 Download gff for
UFO07925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp46-RA | 73..778 | 9..715 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:16 Download gff for
UFO07925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10413838..10414201 | 351..715 | 98 | == | Plus |
| 3R | 10413373..10413478 | 9..114 | 100 | -> | Plus |
| 3R | 10413544..10413779 | 115..350 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:02 Download gff for
UFO07925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6239095..6239200 | 9..114 | 100 | -> | Plus |
| arm_3R | 6239266..6239501 | 115..350 | 99 | -> | Plus |
| arm_3R | 6239560..6239923 | 351..715 | 98 | == | Plus |
