Clone UFO07927 Report

Search the DGRC for UFO07927

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:79
Well:27
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG11920-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO07927.5prime Sequence

478 bp (316 high quality bases) assembled on 2011-07-17

> UFO07927.5prime
CAGTCGACATGCTGCGAAAACAAGCCAGACAGCGAAGGGAATACCTGTAC
AATAAAGCGCTCACTGAGCGCCTCAAGTCCAAACAAAAAATCCAGGAGAC
CGTTGTGAAAAGCATTAATGAAAACAAAGCAATTGGCTCCAAAAATGTGA
AGAAAAGTCTCACCGCCTACAAGTCGCTGAAATACGCGGATGAGGGTGTC
GATGACCGCACTGTCAATGATGAGTATCACTATGCCGGATGCGAGGATCC
GAAAAATAATGCTGACCACCTCGCACAACCCTTCGTCGAGATTGAAAAAG
GTTCATGAAGGAACTGCCGGCTGATTATCCCAAATGCGCCAGCAAAAGAA
CAGAAGGAAACCTACCACCTGAACTACCCCTAATGGCCCGCCTTGCCGGG
CCAATAAGGTAACCGATTTCCCAAATTGCCCAGAACCTCCGGGCCTCCCC
GAAAAGCCTTGGGGGGCTGGTCTTCTTC

UFO07927.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:33:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG11920-RA 1012 CG11920-RA 61..463 9..421 1680 95.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:33:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25074937..25075125 9..197 945 100 Plus
3R 32079331 3R 25075617..25075758 195..339 560 97.2 Plus
Blast to na_te.dros performed on 2014-11-27 00:33:04 has no hits.

UFO07927.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:07 Download gff for UFO07927.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11920-RA 56..383 9..339 98 == Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:08 Download gff for UFO07927.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11920-RA 61..388 9..339 98 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:19 Download gff for UFO07927.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11920-RA 61..388 9..339 98 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:19 Download gff for UFO07927.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25074937..25075123 9..195 100 -> Plus
3R 25075618..25075758 196..339 97 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:08 Download gff for UFO07927.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20900659..20900845 9..195 100 -> Plus
arm_3R 20901340..20901480 196..339 97 == Plus