UFO07928.5prime Sequence
1119 bp (1027 high quality bases) assembled on 2011-07-17
> UFO07928.5prime
CAGTCGACATGGGTTTCATCTTCGGTTGGCTGTCGACCGAGCACTATGTG
CGCGACATCTTCCTCATGACTTCAGTGGCCGCCATAGTGGCCACCCTGAT
GAGCATTCGGTTCTATCTGCGCATCACGGCGGGACGATGTTTCACCGAGA
CAAAGATGGAGGGCAAGACAGTCATTATCACAGGCGCCAACAGCGGAATT
GGCAAGGAGACGGCCAAGGATCTGGCTGGACGTGGAGCCCGCATCATCAT
GGCCTGCAGGAACCTGGAGACTGCCAATGCAGTGAAGGATGAGATCGTCA
AGGAGACGAAGAACAACAAGATCCTAGTCAAGAAACTGGATCTGGGCTCC
CAGAAGTCCGTCCGTGAGTTCGCCGCTGACATTGTGAAGACCGAGCCCAA
GATCGATGTGCTTATCCACAATGCCGGCATGGCTCTGGCCTTCCGCGGAC
AGACGAGTGAGGATGGCGTGGAGCTGACCATGGCCACCAATCACTATGGA
CCCTTCCTGCTGACGCATCTGCTCATCGATGTACTAAAGAAGAGCGCGCC
GGCTCGCATAGTCATCGTAGCCTCGGAGCTGTACCGCCTGTCGTCGGTTA
ACCTGGCCAAGCTCAATCCCATCGGCACTTTCCCGGCTGCCTACTTATAC
TATGTGTCCAAGTTTGCGAACATCTACTTTGCCCGGGAGCTGGCCAAGCG
GCTGGAGGGCACCAAGGTTACAGTGAATTTCCTGCATCCCGGCATGATCG
ACTCGGGCATTTGGCGTAACGTTCCCTTCCCCCTCAACTTGCCCATGATG
GCCATCACCAAGGGATTCTTCAAGACCACCAAGGCCGGCGCCCAGACCAC
TATCTATTTGGGCACATCCAATGAGTGGCCAATGTGTCTGGAAAGTACTT
CATGGACTGCAAGGAGGCCACCCTTAATGCTGCTGCCCTCGATGAGGAGA
GGTCTCAGATCTGGGAGGAGTCCGTGAGATTGTCAGCTTACGCCCCAGGA
TCCCAAAATCGCAGCTTTCTAGAACATTCGGTTGGCCGCGCGGTTCCAGG
TAGTGTCATAATCTAATCATAATTCATATCCTTATCCAACTTGGCTAGAG
ATTCTTGGCATGACATTGC
UFO07928.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:33:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7675-RD | 1224 | CG7675-RD | 101..1108 | 9..1010 | 4885 | 99.3 | Plus |
| CG7675-RB | 1272 | CG7675-RB | 149..1156 | 9..1010 | 4885 | 99.3 | Plus |
| CG7675-RC | 1082 | CG7675-RC | 98..966 | 148..1010 | 4190 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:33:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18378240..18378968 | 1010..288 | 3365 | 99 | Minus |
| 3R | 32079331 | 3R | 18379226..18379366 | 288..148 | 705 | 100 | Minus |
| 3R | 32079331 | 3R | 18380213..18380353 | 149..9 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:33:08 has no hits.
UFO07928.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:07 Download gff for
UFO07928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7675-RB | 142..1156 | 1..1014 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:11 Download gff for
UFO07928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7675-RB | 142..1156 | 1..1014 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:21 Download gff for
UFO07928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7675-RB | 145..1159 | 1..1014 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:21 Download gff for
UFO07928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18378240..18378967 | 289..1010 | 99 | <- | Minus |
| 3R | 18379226..18379364 | 150..288 | 100 | <- | Minus |
| 3R | 18380213..18380358 | 3..149 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:11 Download gff for
UFO07928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14203962..14204689 | 289..1010 | 99 | <- | Minus |
| arm_3R | 14204948..14205086 | 150..288 | 100 | <- | Minus |
| arm_3R | 14205935..14206080 | 3..149 | 97 | | Minus |
