UFO07929.5prime Sequence
1127 bp (1018 high quality bases) assembled on 2011-07-17
> UFO07929.5prime
CAGTCGACATGGTGAACGGCCGCATACCCTCGGTCTTCTCGAAGACCTAC
GTGACTCCCCGTCGCCCCTATGAGAAGGCGCGTCTGGACCAGGAGTTGAA
GATCATCGGCGAGTATGGTCTGCGCAACAAGCGCGAAGTGTGGCGCGTCA
AGTACGCCCTGGCTAAGATCCGTAAGGCCGCTCGTGAGCTGCTGACCCTC
GACGAGAAGGACGAGAAGCGTCTGTTCCAGGGTAATGCCCTGCTGCGCCG
TCTGGTCCGTATCGGTGTCCTGGACGAGTCCCGCATGAAGCTCGATTACG
TGCTGGGTCTGAAGATTGAGGACTTCTTGGAGCGTCGTCTGCAGACGCAG
GTGTTCAAGCTGGGACTTGCCAAGTCCATCCATCATGCTCGCGTCCTGAT
CCGTCAGCGTCACATTCGTGTCCGCAAGCAGGTGGTCAACATCCCGTCGT
TCGTCGTGCGCCTGGACTCCCAGAAGCACATCGACTTCTCCCTGAAGTCG
CCCTTCGGCGGCGGCCGTCCCGGTCGCGTCAAGAGGAAGAACCTGAAGAA
GAACCAGGGCGGTGGCGGTGGAGCTGCTGAAGAGGAGGAGGACGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCAT
AATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATG
ACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCG
TTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAAC
AGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCAT
CGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCA
CAAACGGCATGATGAACCTGAATCGCAGCGGCATCAGCACCTTGTCGCTT
GCGTATATATTTGCCCATGTGAAACGGGGCGAAGAGTGTCATATTGCCAC
GTTTAAATCAACTGGTGAAACTCACCCAGGATGCTGAAACGAAAACATAT
TCTCAATAACCCTTTAGGAATTGCCAGTTCACGGTAACGGCCACACTCTG
GCGAAAATATTGGTACTGCGAAATCGC
UFO07929.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:33:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS9-RE | 803 | CG3395-RE | 27..612 | 8..593 | 2930 | 100 | Plus |
| RpS9-RD | 706 | CG3395-RD | 27..612 | 8..593 | 2930 | 100 | Plus |
| RpS9-RA | 734 | CG3395-RA | 55..640 | 8..593 | 2930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:33:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9511052..9511279 | 235..8 | 1140 | 100 | Minus |
| 3L | 28110227 | 3L | 9510465..9510652 | 418..231 | 940 | 100 | Minus |
| 3L | 28110227 | 3L | 9509984..9510159 | 593..418 | 880 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:33:12 has no hits.
UFO07929.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:08 Download gff for
UFO07929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS9-RD | 27..617 | 8..599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:14 Download gff for
UFO07929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS9-RA | 55..645 | 8..599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:22 Download gff for
UFO07929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS9-RA | 55..645 | 8..599 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:22 Download gff for
UFO07929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9509979..9510158 | 419..599 | 98 | <- | Minus |
| 3L | 9510465..9510651 | 232..418 | 100 | <- | Minus |
| 3L | 9511056..9511279 | 8..231 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:14 Download gff for
UFO07929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9503079..9503258 | 419..599 | 98 | <- | Minus |
| arm_3L | 9503565..9503751 | 232..418 | 100 | <- | Minus |
| arm_3L | 9504156..9504379 | 8..231 | 100 | | Minus |
