UFO07931.5prime Sequence
1150 bp (1032 high quality bases) assembled on 2011-07-17
> UFO07931.5prime
CAGTCGACATGGCCAGTGGCAACAATGAAACTGAGCCGCTCTACTGCGGC
AGCGGCATGGATAATTTTCATACAAGCTACAAGAACATGCATGGCTATGT
TTCGCTGGTGGTCTGCATCCTGGGCACCATCGCGAATACCTTGAATATCA
TTGTGCTAACCCGACGGGAGATGCGCTCCCCCACGAATGCCATACTCACG
GGTCTGGCCGTGGCCGACCTGGCAGTTATGCTGGAGTATATACCCTACAC
CATACACGACTACATCCTGACGGACAGTTTGCCGCGGGAGGAGAAGCTCA
GCTACAGCTGGGCCTGCTTCATCAAGTTCCATTCGATTTTCGCCCAGGTT
CTGCACACCATTTCCATTTGGCTGACGGTGACCCTGGCTGTTTGGCGTTA
TATAGCGGTGGGTTATCCGCAAAAGAATCGCGTATGGTGCGGTATGAGAA
CCACCATAATAACGATAACCACCGCTTATGTGGTGTGTGTTCTGGTGGTG
TCGCCGTCGCTCTATTTGATCACGGCTATAACCGAATATGTCGATCAGTT
GGATATGAATGGCAAAGTGATAAACTCCATTCCCATGACCCAGTACGTAA
TCGATTATCGTAATGAGTTACTGAGTGCCAGGACGGCTGCCCTGAATGCC
ACGCCCACCAGTGCACCACTGAACGAAACTGTGTGGTTAAATGCGAGCAC
CTTGCTGACATCGACAACCACCGCTGCACCACCCACGCCATCGCCAGTGG
TGCGAAATGTTACTGTCTATAGGCTATACCACAGCGATTTGGCGTTGCAC
AATGCCTCGCTGCAAAATGCCACATTTCTCATATACAGTGTAGTGATTAA
GCTGATACCATGCATAGCACTCACCATTCTGTCGGTTCGATTGATCCTGG
CCTTACTGGAGCCAAGCGGCGGCGGAGAGCTCACCAGCAAGCCCGCCACT
CGGTGCCAGTATGAACCAAATCACCGGCCAATGTAAAGCAGCGGATAGCC
CCGGAAAATAGCAAACTCCTGGAAAAGAAAAGCGAACGATCGCCACCACG
AGAATGCCTGCTGCCGGTGCTACTCCTCTTTCTCATACTGAATTTCCAAG
ATATGCTCGCCTGAAATGCGTGACTCGAGTCTCTAATCTGCAGTTACTAG
UFO07931.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:33:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MsR1-RB | 3544 | CG8985-RB | 426..1526 | 9..1098 | 5060 | 98.2 | Plus |
| MsR1-RA | 3544 | CG8985-RA | 426..1526 | 9..1098 | 5060 | 98.2 | Plus |
| MsR2-RC | 2918 | CG43745-RC | 573..1041 | 34..502 | 1070 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:33:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2342646..2343680 | 75..1098 | 4445 | 97.3 | Plus |
| 3L | 28110227 | 3L | 2298178..2298578 | 102..502 | 1000 | 83.3 | Plus |
| 3L | 28110227 | 3L | 2338922..2338989 | 9..76 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:33:15 has no hits.
UFO07931.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:09 Download gff for
UFO07931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DmsR-1-RA | 421..1526 | 1..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:16 Download gff for
UFO07931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MsR1-RA | 421..1526 | 1..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:24 Download gff for
UFO07931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MsR1-RA | 421..1526 | 1..1098 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:24 Download gff for
UFO07931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2338917..2338989 | 1..76 | 94 | -> | Plus |
| 3L | 2342648..2343680 | 77..1098 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:16 Download gff for
UFO07931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2338917..2338989 | 1..76 | 94 | -> | Plus |
| arm_3L | 2342648..2343680 | 77..1098 | 98 | | Plus |
