UFO07933.5prime Sequence
1112 bp (971 high quality bases) assembled on 2011-07-17
> UFO07933.5prime
CAGTCGACATGGACTCCGACGCCGCACAAAAGACCTGGGAGCTGGAGAAC
AACATCCAGACGTTGCCCAGTTGTGACGAGATCTTTCGCTACGACGCCGA
ACAGCAGCGGCAGATCATCGATGCGAAGCCCTGGGAGAAAGATCCCCACT
TCTTTAAGGACATTAAGATCTCGGCTCTGGCGCTCCTAAAGATGGTGATG
CACGCTCGCTCTGGCGGTACTTTGGAGGTGATGGGTCTAATGCTTGGCAA
GGTAGAGGACAACACAATGATTGTCATGGATGCATTTGCACTGCCAGTGG
AGGGCACTGAAACCCGCGTCAATGCCCAGGCACAAGCGTACGAGTACATG
ACCGCCTACATGGAAGCGGCCAAAGAGGTGGGACGCATGGAACACGCCGT
GGGCTGGTATCACAGCCATCCCGGTTACGGTTGCTGGTTGTCCGGCATCG
ATGTGTCCACCCAGATGCTCAACCAGACATACCAGGAGCCATTCGTGGCC
ATTGTGGTTGATCCGGTGCGCACTGTTTCCGCTGGCAAGGTGTGTCTGGG
TGCATTCCGCACGTATCCAAAAGGTTATAAGCCACCAAACGAGGAGCCCT
CGGAGTATCAGACCATCCCGCTGAATAAGATCGAAGACTTTGGAGTCCAC
TGCAAGCAGTACTATCCCTTGGAAATTAGCTACTTCAAGTCTGCTCTGGA
CCGCAGGCTCCTCGACTCTCTGTGGAACAAATACTGGGTAAACACACTGG
GCAGCTCGGGTCTGCTCACCAACACAGAGTACACCACCGGTCAGATCATG
GATCTCTCCGAGAAGCTGGAGCAGAGTGAGAACTTTTTAGGTCGCGGAAC
CGATGTCAATGAGAAGCGTTCGGAGGATAGCTGTCCAAAGCCACCCGAGA
CTGCAGCCGCTCCACATTGACTGATACACGGCTTGATGCTCAGATTGTAA
GACAACTTTTCACAGTCGAACTGACAAAGCAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCAGTAAGTGGTCATAATCATATCTATCATTATCATATC
ACAACTAGGCCTAAGGAATCTGTCCATGACTATTGCTTGAATTCCCACCA
ATAAAGCCTGGC
UFO07933.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:33:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN5-RA | 1196 | CG14884-RA | 81..1041 | 9..962 | 4615 | 99.2 | Plus |
| CSN5-RB | 1190 | CG14884-RB | 81..1035 | 9..962 | 4515 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:33:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16470492..16471070 | 269..847 | 2895 | 100 | Plus |
| 3R | 32079331 | 3R | 16470179..16470439 | 9..269 | 1305 | 100 | Plus |
| 3R | 32079331 | 3R | 16471128..16471234 | 846..948 | 320 | 95.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:33:22 has no hits.
UFO07933.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:10 Download gff for
UFO07933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN5-RA | 71..1039 | 1..962 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:20 Download gff for
UFO07933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN5-RA | 73..1041 | 1..962 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:27 Download gff for
UFO07933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN5-RA | 73..1041 | 1..962 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:27 Download gff for
UFO07933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16470171..16470439 | 1..269 | 98 | -> | Plus |
| 3R | 16470493..16471069 | 270..846 | 100 | -> | Plus |
| 3R | 16471129..16471251 | 847..962 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:20 Download gff for
UFO07933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12295893..12296161 | 1..269 | 98 | -> | Plus |
| arm_3R | 12296215..12296791 | 270..846 | 100 | -> | Plus |
| arm_3R | 12296851..12296973 | 847..962 | 93 | | Plus |
