UFO07934.5prime Sequence
1149 bp (1011 high quality bases) assembled on 2011-07-17
> UFO07934.5prime
CAGTCGACATGTCCTCGACCGCCGGAAAGCGCAAGGAGATCTACAAATAT
CTCGCGCCATGGCCACTGTACTCCATGAACTGGAGTGTAAGGCCGGACAA
GCGATTCCGGCTCGCACTGGGCAGCTTCATCGAGGAGTACAACAACAAGG
TACAGATCATCAGCCTGGACGAGGACACCAGCGAATTTAGTGCTAAGAGC
ACCTTTGATCATCCATATCCGACAACCAAGATCATGTGGATCCCGGACTC
CAAGGGTGTCTATCCGGATCTGTTGGCCACCAGTGGCGACTACTTGCGGG
TGTGGCGTGCCGGGGAACCGGACACGCGGCTCGAGTGCGTACTGAATAAC
AACAAGAACAGCGACTTTTGCGCTCCCCTCACTTCGTTTGATTGGAACGA
GGTGGATCCCAATCTGGTGGGAACCTCATCGATAGACACAACCTGCACTA
TCTGGGGACTGGAGACCGGACAGCCGCACGCTCGCGTCTATGTGGCAGGA
CACGTGAAGACGCAATTGATTGCCCATGACAAGGAAGTATACGACATTGC
TTTTTCGCGGGCCGGCGGCGGTCGGGACATGTTTGCCTCGGTGGGAGCGG
ACGGGTCGGTGCGCATGTTTGATCTGCGGCACTTGGAGCACTCGACCATT
ATATATGAGGATCCTGCTCATACGGCGCTGCTGCGCTTGGCCTGAACAAA
CAGGACCCGAACTACTTAGCCACCGTTGCCATGGACTCGTGCGAAGTAAT
AATTTTAGATGTTCGTGTTCCTTGTACACCCGTTGCAAGACTGAGCAATC
ACAGAGCGTGCGTCAACGGTATTGCGTGGGCGCCGCATAGTTCCTGTCAC
ATCTGCACTGCCGGTGATGATCACCAAGCACTGATCTGGGATATACAACA
AATGCCACGTGCATCGAGGATCCAATTTTAGCCTATACAGCTGCCGAGGG
GCGAGTCAATCAGATTCAGTGGGTGCCACACAGCCCGACTGATAGCCATT
TGCTATAACAAAGCGTGCGAGATCTGCGTCGCAGCTTTCTAGACATTCGT
TTGGCGGGGCCAGTAAGTGGCCATAAATCATATCTATCTAATCTATCCCA
CTAGCCTAGAATCTGCTGACTATGGCTGGATTCCCAATAAATCGCCCGT
UFO07934.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:32:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wap-RD | 3366 | CG14614-RD | 550..1569 | 9..1024 | 4955 | 99.4 | Plus |
| wap-RC | 3400 | CG14614-RC | 695..1714 | 9..1024 | 4955 | 99.4 | Plus |
| wap-RB | 3283 | CG14614-RB | 578..1597 | 9..1024 | 4955 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:32:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22453730..22454192 | 660..198 | 2315 | 100 | Minus |
| X | 23542271 | X | 22454394..22454584 | 199..9 | 955 | 100 | Minus |
| X | 23542271 | X | 22453491..22453674 | 840..658 | 870 | 99.5 | Minus |
| X | 23542271 | X | 22453242..22453430 | 1024..839 | 750 | 96.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:32:48 has no hits.
UFO07934.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:04 Download gff for
UFO07934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14614-RB | 574..1608 | 1..1028 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:20:59 Download gff for
UFO07934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14614-RC | 691..1725 | 1..1028 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:11 Download gff for
UFO07934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wap-RB | 568..1602 | 1..1028 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:11 Download gff for
UFO07934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22453237..22453428 | 841..1028 | 96 | <- | Minus |
| X | 22453491..22453672 | 660..840 | 99 | <- | Minus |
| X | 22453731..22454190 | 200..659 | 100 | <- | Minus |
| X | 22454394..22454589 | 1..199 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:20:59 Download gff for
UFO07934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21855073..21855264 | 841..1028 | 96 | <- | Minus |
| arm_X | 21855327..21855508 | 660..840 | 99 | <- | Minus |
| arm_X | 21855567..21856026 | 200..659 | 100 | <- | Minus |
| arm_X | 21856230..21856425 | 1..199 | 97 | | Minus |
