UFO07939.5prime Sequence
1136 bp (1020 high quality bases) assembled on 2011-07-17
> UFO07939.5prime
CAGTCGACATGGCTAACCTGATTCTATATGGCACTGAGTCCAGTCCGCCG
GTCCGTGCCGTTTTGTTGACCCTTCGTGCCCTCCAGCTGGACCATGAATT
CCATACGCTGGACATGCAGGCCGGCGATCATCTGAAGCCGGATATGTTAC
GCAAGAATCCCCAGCACACGGTACCCATGCTGGAGGATGGTGAGTCATGC
ATTTGGGACTCACACGCCATCATCGGCTATCTGGTGAACAAGTACGCCCA
GTCGGATGAGCTCTATCCAAAGGATCCGCTGAAGCGAGCTGTGGTGGATC
AGCGGCTGCATTTCGAGACCGGTGTCCTTTTTCACGGCATCTTCAAGCAA
TTGCAGAGAGCTCTGTTCAAAGAGAATGCCACTGAGGTGCCCAAGGATCG
TTTGGCTGAGTTGAAGGATGCCTACGCCTTGCTGGAGCAATTTCTGGCGG
AGAATCCCTATGTGGCCGGTCCTCAGCTGACCATCGCCGATTTTAGCATT
GTGGCCACCGTGAGCACTCTGCACCTGAGCTACTGTCCCGTGGATGCGAC
CAAATACCCCAAATTATCCGCCTGGTTGGCACGTATCTCCGCATTGCCCT
TCTATGAGGAGGACAACTTGAGAGGAGCCCGCTTGTTGGCCGATAAGATT
CGCTCCAAGCTGCCCAAGCAGTTTGACAAGCTGTGGCAAAAGGCCTTTGA
GGACATCAAGAGCGGAGCTGGAAAACAGGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAT
CATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATT
CTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCA
GATGGAGTTCTGAGTCATTACTGGATCTATCAACAGAGTCCAAGCGAGCT
CGATATCAATTACGCCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAAT
TCATAAGCATTCTGCCGACATGCAGCATCCACAAACGCCATGATGAACTG
ATTCGCAGCGCCATCAGCACCTTGTCGCCTTGGATAAAATATTGGCCATG
GTGAAAACCGGGGGCGAAGATGCCATTGCCACGTTT
UFO07939.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:33:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstE10-RB | 1134 | CG17522-RB | 307..1026 | 9..728 | 3600 | 100 | Plus |
| GstE10-RA | 889 | CG17522-RA | 62..781 | 9..728 | 3600 | 100 | Plus |
| GstE5-RA | 734 | CG17527-RA | 174..340 | 153..319 | 295 | 79.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:33:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18396746..18397465 | 728..9 | 3600 | 100 | Minus |
| 2R | 25286936 | 2R | 18404778..18404944 | 153..319 | 280 | 77.8 | Plus |
| 2R | 25286936 | 2R | 18403419..18403592 | 153..326 | 270 | 77 | Plus |
| 2R | 25286936 | 2R | 18407099..18407268 | 153..322 | 250 | 76.5 | Plus |
| 2R | 25286936 | 2R | 18398582..18398705 | 153..276 | 245 | 79.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:33:36 has no hits.
UFO07939.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:13 Download gff for
UFO07939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstE10-RA | 54..787 | 1..734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:31 Download gff for
UFO07939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstE10-RA | 54..787 | 1..734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:35 Download gff for
UFO07939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstE10-RA | 54..787 | 1..734 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:35 Download gff for
UFO07939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18396740..18397469 | 1..734 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:31 Download gff for
UFO07939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14284245..14284974 | 1..734 | 99 | | Minus |
