UFO07941.5prime Sequence
337 bp (337 high quality bases) assembled on 2011-07-17
> UFO07941.5prime
CAGTCGACATGGAATACAGCGGAGTGCGGTTACCCGGAATTTTTTGTCCG
GATGAAAGCATTGAGCAGTTTGCAAGACTTTACGGAAGTGATAATTTTAG
CAAAATGATGATAATAGCCACGACCAGTAGTCCTCCGAGGACTATGCAGG
CCACAACTCATTCACCTCCAGGAATGATGGGGGGGAATCCGTCCAGGTTT
CAAGGGAATGCATCAACAGCTCACGATCGAAATCTAAAAGTTAATCACCG
ATATGCTCATAATGTGCAGGCCCCATCCAATCCGCACCCGGTCATAATGG
GTCCGTCCAGGTTTCATGGAAATCTACCACCTATTCA
UFO07941.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:33:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31206-RA | 832 | CG31206-RA | 79..409 | 7..337 | 1655 | 100 | Plus |
| CG31206-RB | 856 | CG31206-RB | 79..433 | 7..337 | 1405 | 93.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:33:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20107573..20107778 | 259..54 | 1030 | 100 | Minus |
| 3R | 32079331 | 3R | 20107423..20107500 | 337..260 | 390 | 100 | Minus |
| 3R | 32079331 | 3R | 20107834..20107885 | 58..7 | 245 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:33:44 has no hits.
UFO07941.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:14 Download gff for
UFO07941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31206-RA | 110..446 | 1..336 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:35 Download gff for
UFO07941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31206-RA | 72..408 | 1..336 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:38 Download gff for
UFO07941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31206-RA | 72..408 | 1..336 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:38 Download gff for
UFO07941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20107839..20107888 | 1..53 | 92 | | Minus |
| 3R | 20107424..20107500 | 260..336 | 100 | <- | Minus |
| 3R | 20107573..20107778 | 54..259 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:35 Download gff for
UFO07941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15933561..15933610 | 1..53 | 92 | | Minus |
| arm_3R | 15933146..15933222 | 260..336 | 100 | <- | Minus |
| arm_3R | 15933295..15933500 | 54..259 | 100 | <- | Minus |
