UFO07944.5prime Sequence
1133 bp (1037 high quality bases) assembled on 2011-07-17
> UFO07944.5prime
CAGTCGACATGAATACCTACGACGAAGTCTTGGCAACAGTGCTGGACAAT
TTGCTGGCATCCAAGAACTGTGAGGTGGTCGACGACGTACTGCGTCAGTC
GATGCTGGAACTTTTGCGTGGCAAATTCCGTGAGATTGCACGTCAGACTA
CCAATTGGTCCAATCACGCTGGTCGCTGTGCACCCAGCTACTTCGATCTG
GAGCGCACCTTCATCCGGATGAACATCAAGGTGGGCGAGCTAAAGGCCAT
GTACGAGGGTCAACCGGATTCGTTGGTCTTGGTTGAGTGCAATGCACCGG
AGACACAAGACCAGGACTTCCACAGTGTGCCGCAACCCGTGCTGAGCTCC
ACAAAGGCCGTGGAATTGGCCTCCACCACGTATATTCCGGACCATTTGCC
ACCATTTCCAGGGGCGCACACCTATAAGAGTTCGACCATTGAGAAGGTTA
CGGATCGCAGCTATGTGGCCATGAGGAATCGCCATGCCGAGAATGAGCTG
AACACCCAAAACGCCTTAAATCAATACTACCTGAGGTGCAACCCCAATAT
ATCGCTGTTCGAAGAAACCCAACGCGATGGAAGTGGCCACGTTTTGGATC
TAGGTCCACCCAAGAAACTTCCTTATTCGGACGCCCTGATGCCAAGAAAT
CAGGTCTTTGATACGGACATCTATGCTCCCATCGAGGTGATAACCCACAA
AGCCCTCGACTGCCGTTACTTGGAGAAGCCCAAGTTGCACAGTTCACGCC
CATCCTCAGGAAATTTCGAAGAGGAAGACGTGGAAATGGAGGAGCCCTGC
AGTCCAGGGGGACTAGGTATTGAAAAACCGAATGCAAGCTTTCTAGACCA
TTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATC
ATAATCATAATCACACTAGCCTAGAGATCCTGGTCATGACTAGTGCTTGG
ATCTCACATAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAATCCAGA
TGGAGTTCTGGAGGTCATTACTGGATCTATCAACAGGAGTCAGCGGAGCT
CGATTCCAATTACGCCCGCCTGCACTTCTTTGGCAGTACTGTTTGTAATT
CATAAGCAATCTTGCCAACTGGAAGCCATCAAA
UFO07944.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:33:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sa-RA | 956 | CG11308-RA | 43..867 | 9..833 | 4125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:33:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21405940..21406518 | 702..124 | 2895 | 100 | Minus |
| 3L | 28110227 | 3L | 21405514..21405646 | 833..701 | 665 | 100 | Minus |
| 3L | 28110227 | 3L | 21406582..21406696 | 123..9 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:33:52 has no hits.
UFO07944.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:15 Download gff for
UFO07944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sa-RA | 80..910 | 9..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:39 Download gff for
UFO07944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sa-RA | 43..873 | 9..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:42 Download gff for
UFO07944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sa-RA | 43..873 | 9..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:42 Download gff for
UFO07944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21405508..21405644 | 703..840 | 97 | <- | Minus |
| 3L | 21405940..21406518 | 124..702 | 100 | <- | Minus |
| 3L | 21406582..21406696 | 9..123 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:39 Download gff for
UFO07944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21398608..21398744 | 703..840 | 97 | <- | Minus |
| arm_3L | 21399040..21399618 | 124..702 | 100 | <- | Minus |
| arm_3L | 21399682..21399796 | 9..123 | 100 | | Minus |
