UFO07946.5prime Sequence
814 bp (814 high quality bases) assembled on 2011-07-17
> UFO07946.5prime
CAGTCGACATGACCATTCTACTTCGTACTCCCAGAGCGGTGGAGCTTTGG
AAGTGGAGTAATGGCAATTACTCTCTATCAAGCAGGCTGATAGATGGGCA
GGTGGAGCAAATGGCTCTTAGTCAAGGAGGTGCTGGCATAGAGAGCGGAT
ATGTGGCGCTGATGGCTTCATCGCCAGCAGCAGAGATTCGGATTTACAGC
TTCGGCAGCCCAGACACGAGCAGCTTCCAACTGGACCAAGTCCTGGAGCT
CGAGGACTCCCAACAGTCGCGGGTAATGCGCTTTATGCACCTGCCCGAGT
CCGACGATCTACTGCTCTGTGTGTCCAACGTACTGCCGCAGCAACCGCTT
CGCATCTACCAGCACCGCGGAGCAGCGGGATTCCAGCAAATCCTCGGCGA
CAGCGCCTTGCCAAAGGCTCATGCCCTGGAGGTGCTCTATCTGCCCAGCC
ATAAGCTGCGACTGCTGTCCATGGCCACGGAGGAGTCGGTCTACTTGCTG
CAGCCACAGTTTACTACACTTGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCAACAGAGTCCAAGCGAGCTCGATAT
AAATTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTA
AGCATTCTGCCCGA
UFO07946.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:33:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| clos-RD | 5621 | CG42600-RD | 5053..5565 | 9..521 | 2565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:33:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9588009..9588337 | 521..193 | 1630 | 99.7 | Minus |
| 2R | 25286936 | 2R | 9588391..9588581 | 199..9 | 955 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:33:25 has no hits.
UFO07946.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:11 Download gff for
UFO07946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| clos-RD | 5045..5574 | 1..532 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:24 Download gff for
UFO07946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| clos-RD | 5045..5574 | 1..532 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:30 Download gff for
UFO07946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| clos-RD | 5045..5574 | 1..532 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:30 Download gff for
UFO07946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9588000..9588330 | 200..532 | 98 | <- | Minus |
| 2R | 9588391..9588589 | 1..199 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:24 Download gff for
UFO07946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5475505..5475835 | 200..532 | 98 | <- | Minus |
| arm_2R | 5475896..5476094 | 1..199 | 98 | | Minus |
