UFO07948.5prime Sequence
1107 bp (1004 high quality bases) assembled on 2011-07-17
> UFO07948.5prime
CAGTCGACATGGGACGTTTTCAACGCTATGAACTGGACTTGGCCCAGCTG
GCGATCTTCATGAGATTGGATCGTATTGCATTGGTCGATTTTGTGGCTGA
GACTTATCGAGTGAGAGCTGGGATCATGTTTCGGCAGCCACCTCTCTCGG
CAGTGGCCAATATATTCGCTATGCCCTTTGAGAACGATGTGTGGGTGTCC
ATTTTGATGCTACTGATCATCACGACCGTGGTCTTGGTTCTGGAACTCTT
CTTTTCGCCACACAACCACGACATGTCCTACATGGATACACTAAATTTTG
TTTGGGGTGCTATGTGCCAGCAGGGTTTCTACGTAGAGGTGCGGAACCGA
TCGGCGAGAATCATTGTCTTCACCACATTTGTTGCAGCTCTCTTCTTGTT
CACCTCGTTTTCGGCCAATATTGTGGCCCTGCTGCAAAGTCCGTCGGATG
CTATCCAGTCATTGTCTGATCTGGGACAATCGCCTCTAGAAATCGGAGTT
CAGGACACGCAATATAATAAAATATACTTCACCGAGTCCACAGATCCCGT
AACGAAGAATCTTTACCACAAAAAGATCGCGTCCAAAGGTGAAAATATCT
ATATGCGCCCCTTGCTAGGAATGGAGAAAATGCGAACCGGCTTATTTGCA
TACCAGGTTGAACTCCAGGCTGGTTACCAAATCGTCAGCGACACCTTCAG
CGAGCCGGAAAAGTGCGGATTAATGGAACTGGAGCCTTTTCAGCTGCCCA
TGCTAGCTATTCCAACAAGGAAAAACTTTCCTTACAAGGAGCTCATTCGA
AGGCAACTACGCTGGCAGCGAGAAGTAAGCTTGGTGAATCGCGAGGAGCG
AAAGTGGATTCCTCAGAGCCCAAATGCGAGGGCGGAGTTGGCGGATTTGT
CTCCATTGGCATTACAGAATGCCGGTATGCTTTGGGGATCTTTGGGTGTG
GAGCTGCTGTCAGTTTGTCCTGTTTCTTTTCGAGTTATCTTCCGACACTT
CAACAGGTTATCCCATATTAAGGCTATAGGAATGCACGCGCAGCTTCCTA
GACCATCGTTGCGCGCGGGTAGGTAATGGTCCTAATCTAATCTAATCCAT
ATCATAT
UFO07948.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:33:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14077-RB | 3077 | CG14077-RB | 1749..2777 | 8..1029 | 4925 | 99 | Plus |
| Ir75d-RC | 2312 | CG14076-RC | 984..2012 | 8..1029 | 4925 | 99 | Plus |
| CG6841-RB | 3382 | CG6841-RB | 2968..3198 | 1029..806 | 935 | 95.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:33:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18909024..18909821 | 805..8 | 3990 | 100 | Minus |
| 3L | 28110227 | 3L | 18908590..18908790 | 1003..806 | 840 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:33:29 has no hits.
UFO07948.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:11 Download gff for
UFO07948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ir75d-RA | 834..1849 | 1..1012 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:26 Download gff for
UFO07948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ir75d-RC | 978..1993 | 1..1012 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:32 Download gff for
UFO07948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ir75d-RC | 978..1993 | 1..1012 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:32 Download gff for
UFO07948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18908579..18908790 | 806..1012 | 96 | <- | Minus |
| 3L | 18909024..18909825 | 1..805 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:26 Download gff for
UFO07948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18901679..18901890 | 806..1012 | 96 | <- | Minus |
| arm_3L | 18902124..18902925 | 1..805 | 99 | | Minus |
