UFO07956.5prime Sequence
1139 bp (1017 high quality bases) assembled on 2011-07-17
> UFO07956.5prime
CAGTCGACATGAACTGCAAGCTACGCCGCCTGGACCTGTTGCGGAATGGC
CAAAAGTCGGACTGCGAGCTCCATGTCTCGCAACCGGACAAGTTGAAGGA
GGGCAAGCGTTGTCCATGCATTTTCCGCTGCCACCAGGTGATGCTCATCT
CCGCCTCCGCGGAGTTCGAGCGCCTGATCAGGGATCCCGAGTTCCAGAAG
AACAAGCGAGTGATCAGCGTGGACGACGCCTCTCCCACCGCCTACGAGGC
GTTGCTCCTCTACATCTACACGTACGAGGTGTGCAATGCGGTGACCATCG
ACATGTGCGGTGACCTCATGCTGCTGGCCGAGCGCTACGAGATGCTGGAC
TTCATCGACTGCTACATCGACAAGCTGGCCCACCAGGAGTGGCCCATGGA
GGTGGTTCTGCAGGTCTTCCACCTGGCCAGCGAGCACCACCATCCGGCAC
TGATGGATCTCGTGGCGAAAAAAATCCTCCCCGTAGCCACGCAGGTGCTC
ATGGACAACTCGTTCCTCAAGCTGAGTGTTAAGGAGCTAAAGGCTCTGAT
GATAATCCTGAAAAAGGATGGAGATCTCTCCGATCACGAACTGCTGACCT
CGCTGAAGAACTACCAGGATGTGAACAACCTGCGCTACGAGGACATGGAG
CAGTTCCAGCAGCTCGTTGAGGTAACCCAGTTGTTCGGTCACGTTCTCTT
CGAAGTGGATGGCACCATAGTTGTGCCCGAAGAAGAAAAACCTTCGCCGG
AGGAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGC
GGCAACCGAGCGTTCTGACAAATCCAGATGGAGTTCTGAGGTCATTACTG
GATCTATCACAGGAGTCCAAGCGGGCCTCGATATCAATTACGCCCCGCCC
TGCCACTCATCGCAGTACTGTTGTATTCATTAAGCATTCTGCGACATGGG
AAGCCATCACAAACCGCATGAGTGAACTTGATCGCCCAGCGGCAATCAGC
ACTTGTCGCCTTGGCCTTTAATTGCATGGTGAACGGGGC
UFO07956.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:34:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14260-RA | 919 | CG14260-RA | 31..777 | 9..755 | 3735 | 100 | Plus |
| CG14260-RB | 903 | CG14260-RB | 31..761 | 9..755 | 3485 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:34:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27265487..27265948 | 9..470 | 2310 | 100 | Plus |
| 3R | 32079331 | 3R | 27265997..27266281 | 471..755 | 1425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:34:32 has no hits.
UFO07956.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:23 Download gff for
UFO07956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14260-RA | 23..777 | 1..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:22:04 Download gff for
UFO07956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14260-RA | 23..777 | 1..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:58 Download gff for
UFO07956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14260-RA | 23..777 | 1..755 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:58 Download gff for
UFO07956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27265479..27265948 | 1..470 | 99 | -> | Plus |
| 3R | 27265997..27266281 | 471..755 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:22:04 Download gff for
UFO07956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23091201..23091670 | 1..470 | 99 | -> | Plus |
| arm_3R | 23091719..23092003 | 471..755 | 100 | == | Plus |
