UFO07960.5prime Sequence
1133 bp (1032 high quality bases) assembled on 2011-07-17
> UFO07960.5prime
CAGTCGACATGCGATTCGCGCCAAGCTTGAGCCTCAAATCAACTAGAGGA
GTTCATCAGTCGGATACGGAAGTGAGCAAGATCATGAGGTCCTTGGATGT
GATACCAGATGTAATACACATCGGACCGCAGGAGTTTCTTAATGTTACTT
ACCACGGGCATTTAGCAGCACATTGTGGAAAGGTACTGGAACCCATGCAA
GTGCGTGATGAACCCTCCGTAAAGTGGCCCTCGGCACCGGAAAACTACTA
CGCCCTGCTGATGGTGGATCCGGACGTACCCAATGCTATAACACCCACGC
ACCGGGAGTTCCTACACTGGATGGTCCTCAACATACCCGGCAATCTGTTG
GCCCTTGGGGACGTGCGCGTGGGATACATGGGTGCCACTCCGCTGAAGGG
GACCGGAACCCATCGGTTCGTCTTCCTGCTCTACAAACAGAGGGACTACA
CCAAGTTTGACTTCCCGAAACTGCCGAAGCACTCGGTTAAGGGTCGCAGT
GGCTTTGAAACCAAGCGGTTCGCAAAGAAATACAGATTTGGCCATCCGGT
AGCTGGGAACTTCTTCACATCCCAATGGAGCCCCGATGTCCCATCCCTTA
TCAAAGCCATCTCGCACAATGCCCGTCAAGTAGCACACTTTGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTT
CTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAG
GAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCG
CAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACA
AACGGCATGATGACCTGATCGCAGCGGCATCAGCACCTGTCGCCTTGCGT
ATAAATATTTGCCATGGTGAACGGGGGCGAAAAGTGTCCATATTGGCACG
TTTAATCAACTGTAAACTCACCCAAGGGATGCTGAAACGAAAACTTTTCA
TTACGTAGAATGGCAGCTTACGTAACGCCCAAC
UFO07960.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:34:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17917-RA | 706 | CG17917-RA | 33..666 | 8..641 | 3170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:34:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6342336..6342833 | 144..641 | 2490 | 100 | Plus |
| 3R | 32079331 | 3R | 6342000..6342137 | 8..145 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:34:07 has no hits.
UFO07960.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:18 Download gff for
UFO07960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17917-RA | 33..673 | 8..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:48 Download gff for
UFO07960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17917-RA | 33..673 | 8..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:48 Download gff for
UFO07960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17917-RA | 33..673 | 8..650 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:48 Download gff for
UFO07960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6342000..6342135 | 8..143 | 100 | -> | Plus |
| 3R | 6342336..6342840 | 144..650 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:48 Download gff for
UFO07960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2167722..2167857 | 8..143 | 100 | -> | Plus |
| arm_3R | 2168058..2168562 | 144..650 | 99 | == | Plus |
