UFO07962.5prime Sequence
1121 bp (1025 high quality bases) assembled on 2011-07-17
> UFO07962.5prime
CAGTCGACATGTCCGTGCTGCCCAACGCCGGAAACAATGAATCGTCGGTG
ACGGCGCCCAAAATGTTTGGCGATCCGGATTTGGATCGCATGGCGATGGA
GTACGTCGGAAACATGCAGCGCTACCGCGAGAACATCATAATCCCCAAGA
GCAACGGCCCCGTGAAGATCAAGACCAACGAGGAGAAGTTCATCGAAACG
GCGGTGGAGAGCTGTGGATTCAAATGCACCATGGCCTGTGTGATGGGCTA
TGGCTTGGGTGCAGCTTTGGGTTTGTTTAGCGCCTCCGTTAATCCCAACA
TGGCCGATCCGTTCGCGAATGAGAAGAAGCAGACGGCCAGGGAGGTTTTC
CGCGAAATGCGCTCCACCACCCATTCCTACGCGAAGAATTTCGCGCTCAT
CGGCTGTGTGTTCTCCGCCGTCGAGTGCACCATCGAGAGCCATCGGGGCG
TCACGGACTGGAAGAATGGCACCTACGCTGGAGGCATCACTGGAGGACTG
ATTGGTTTGCGGGCTGGCGTTAAGGCGGGCATCATCGGCGGCCTGGGATT
CGCCGCCTTCTCCACGGCCATCGACTACTACATGTATTCTAGAGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCAT
AATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATG
ACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCG
TTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAAC
AGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCAT
CGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCA
CAAACGGCATGATGAACCTGAATCGCAGCGGCATCAGCACTTGTCGCTTG
CGTATATATTTGCCCATGTGAAACGGGGCGAGAGTGTCATATGCCACGTT
TAATCAAACTGTGACTCACCAGGATGCTGAAACGAAACTATTCTCATAAG
CGTTAGAATAGCAGGTTCCGGTAACCGCCAACTGCACTTTGTCAACTCGC
GATCGCCTGATTTCATTCCGA
UFO07962.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:34:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31229-RA | 777 | CG31229-RA | 134..718 | 9..593 | 2925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:34:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18667985..18668223 | 9..247 | 1195 | 100 | Plus |
| 3R | 32079331 | 3R | 18668608..18668802 | 246..440 | 975 | 100 | Plus |
| 3R | 32079331 | 3R | 18668872..18669024 | 441..593 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:34:47 has no hits.
UFO07962.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:26 Download gff for
UFO07962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31229-RA | 106..703 | 2..600 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:22:13 Download gff for
UFO07962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31229-RA | 106..703 | 2..600 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:04 Download gff for
UFO07962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31229-RA | 127..724 | 2..600 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:04 Download gff for
UFO07962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18667978..18668222 | 2..246 | 98 | -> | Plus |
| 3R | 18668609..18668802 | 247..440 | 100 | -> | Plus |
| 3R | 18668872..18669030 | 441..600 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:22:13 Download gff for
UFO07962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14493700..14493944 | 2..246 | 98 | -> | Plus |
| arm_3R | 14494331..14494524 | 247..440 | 100 | -> | Plus |
| arm_3R | 14494594..14494752 | 441..600 | 98 | == | Plus |
