UFO07967.5prime Sequence
1120 bp (1020 high quality bases) assembled on 2011-07-17
> UFO07967.5prime
CAGTCGACATGATAAGTTTCCTGAAATTGGCCAGGAATCCTGGCCAGCTG
CTGCTGCCTGGCAGTGGAGTGCTGCAATCCCAGTGGCTTCGTGGCCAGAA
GACCATGCCGGTGTACGATTACCGTTGCCAAAATCCGCCAAAGTGGGGCT
ACTCGGCCTTCGGACGCAACCAGAAGACCTGGGGCGAGTGGACCTGTGCC
AGGTTGGATGACCTGCTAAACTGGGGACGCAAGGGATCCCTCTGGCCGCT
GACCTTTGGTCTCGCCTGCTGCGCCGTCGAAATGATGCACATTGCGGCTC
CTCGCTACGACATGGATCGCTACGGTGTGGTGTTCCGAGCATCTCCTCGC
CAGGCGGACGTGCTCATCGTGGCCGGAACCCTGACCAACAAGATGGCACC
GGCCTTTCGGAAGATCTACGACCAGATGCCCGAGCCGAGATGGGTCATTT
CCATGGGCAGTTGCGCCAATGGTGGCGGCTACTACCACTACTCCTACTCG
GTGGTTCGCGGCTGCGATCGCATTGTTCCGGTGGACATCTACGTGCCCGG
ATGTCCGCCCACCGCCGAGGCCTTAATGTACGGAATCCTGCAGCTGCAGA
AGAAGGTAAAGCGCATGAGGACCCTGCAGATGTGGTACAGGAAGGCAAGC
TTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCA
TAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCAT
GACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGC
GTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAA
CAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCGCCCTGCCACTCAT
CGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCATCAC
AAACGGCATGATGACCTGATCGCAGCGGCATCAGCACTGTCGCTGCGTAT
ATATTTGCCCATGGTGAACGGGGCGAGAGTTGTCAATTGCCCGGTATCAA
CTGTGACTCACCCAGGATGCTGAAACGAAAACTATTCCAATAACGTAGGA
AATGGCAGTCCACGTAACGC
UFO07967.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:34:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2014-RB | 753 | CG2014-RB | 71..706 | 9..644 | 3180 | 100 | Plus |
| CG2014-RA | 715 | CG2014-RA | 33..668 | 9..644 | 3180 | 100 | Plus |
| CG9172-RC | 1282 | CG9172-RC | 295..741 | 198..644 | 1080 | 82.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:34:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29515845..29516480 | 9..644 | 3180 | 100 | Plus |
| X | 23542271 | X | 15986014..15986460 | 644..198 | 1080 | 82.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:34:58 has no hits.
UFO07967.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:28 Download gff for
UFO07967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2014-RA | 29..668 | 1..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:22:20 Download gff for
UFO07967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2014-RA | 29..668 | 1..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:09 Download gff for
UFO07967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2014-RA | 29..668 | 1..644 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:09 Download gff for
UFO07967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29515841..29516480 | 1..644 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:22:20 Download gff for
UFO07967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25341563..25342202 | 1..644 | 99 | == | Plus |
