UFO07973.5prime Sequence
1141 bp (1029 high quality bases) assembled on 2011-07-17
> UFO07973.5prime
CAGTCGACATGGCATCAGGTTTGCAGCGGGTTAACGAAAATGAGATGAAG
GCAATGGATGCCAATAGGTATGCCACCAAGAAGACGATCGCCCAGGGCAT
GCTGGACATCGCCCTGCTGACCGCCAATGCCTCGCAGCTGAAGTACATCC
TCCAGGTGGGCGAACAGCACCAGTTCTACAAGCTGATGCTGATCCTGATC
AGTCTGTCCATAGTCATGCAGGTGGCTGCTGGACTCTTGCTGGTCATTCA
GTCCCTCATCAATATGCATAATACCAAGGATCGAAATCGGGGCTTCGCCA
TCAACCACTTCATAGATGCCTTCATATTCCTGTCCGTGTTTTGTGACATC
ATGAAGATGAATTTTGGACTGGATCCGGCGGTTCCTCACACAGATGTGGA
ACTTCTGAAGCCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAG
CCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAA
CGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGG
TCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTA
CGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTC
TGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGC
GGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAAC
GGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGA
AACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCT
TTAGGGAAATAGGCCAGGTTTTCACCGTACACGCCACATCTTGCGAATAT
ATGTGTAGAAACTGCCGGAAATCGTCGTGTATTCACTCAGAGCGATGAAA
ACGTTTCAGTTTGCTCATGAAACGTGTAACAGGGTGACACTATCCCATAT
CACCAGCTCACCGTTCTTTCATGCATACGAAGTCGAATGAACATCATCAG
CGGCAGATGTAATAAGCCGATAACTTGGGCTTATTTGCCTT
UFO07973.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:35:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NijC-RB | 770 | CG14394-RB | 243..647 | 9..413 | 2025 | 100 | Plus |
| NijC-RG | 542 | CG14394-RG | 51..419 | 45..413 | 1845 | 100 | Plus |
| NijC-RC | 969 | CG14394-RC | 243..457 | 9..223 | 1075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:35:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12697062..12697256 | 219..413 | 975 | 100 | Plus |
| 3R | 32079331 | 3R | 12696121..12696302 | 43..224 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:35:12 has no hits.
UFO07973.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:31 Download gff for
UFO07973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14394-RB | 218..637 | 1..422 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:22:31 Download gff for
UFO07973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NijC-RB | 235..654 | 1..422 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:17 Download gff for
UFO07973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NijC-RB | 235..654 | 1..422 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:17 Download gff for
UFO07973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12696123..12696299 | 45..221 | 100 | -> | Plus |
| 3R | 12697065..12697256 | 222..413 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:22:31 Download gff for
UFO07973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8521845..8522021 | 45..221 | 100 | -> | Plus |
| arm_3R | 8522787..8522978 | 222..413 | 100 | == | Plus |
