UFO07976.5prime Sequence
1128 bp (1002 high quality bases) assembled on 2011-07-17
> UFO07976.5prime
CAGTCGACATGTTTCTGGACGCCATCTTCTTTATACCGACACTGTTCACT
TACCTGCTTATCGGACTGCTCATCGTCATCCTGTGCTTCGTGGTGGTCTA
TATCAGCCACAAGATCTATGTCTCCGTCTACGACAACCTGCCTCTGGCCG
CCTTGCCCGGCAACTCACGGCAACAGCTCCTGGGACTGCGTCACTCCAAT
CATGCGATGACCATACGGGAATACCTGGACAGCTCGCTCCGCAGCCCACG
TTCCAATCAGCCGAGCTTACGGTCAGTTTGGATTCAGAACCGGTCACAGA
TCCTGGAGACCTCTTCGGTGATGCGTATAGTGCTCTCCCTGGAGCCCTGC
TACCTGGTCAGCGCCGAGTTCGATGTTAGTTCCAGCCGGAAGGCCATCAG
TTTCTTGTGCAACTGCCGGGATCAGCCCGTGTGTGCTGCCTCTGAACCGA
GGCCTTCTGGGTCCTTGCATATAGTGCGGTTCTATGACCACCTCTCCAAG
ATCCCGCGCCTCAAAGTCATGCTCAAGTGTAACCAAAGGCGGCCGGACCC
GAGGCCGGACAGTCGTATCCAGTTGACCCTCGACGACGTGATCCAGGAGG
CCAGAGATAACCAGGATGCCAGGTGTACGGATAACGCCGCCGCCTGCCGA
CCTGGTTCCTCAAGGCGGAACTCCCGGATACCGGATGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCGCCCTGCACTCATCGCAGTACT
GTTGTATTCATTAGCATTCTGCGACATGAGCATCACAAACGCATGATGAC
TGATCCGCAGCGCATCAGCACTTGTCGCTTGGCGTATAATATTTGCATGG
TGAACGGGGCGAGAGTGTCCTATTGGCAGGTTTATTCGACTGTGGTGAAT
CCAGGATGCGTGAACGAAACAATTTCCT
UFO07976.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:35:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3288-RB | 908 | CG3288-RB | 29..707 | 8..686 | 3395 | 100 | Plus |
| CG3288-RA | 790 | CG3288-RA | 29..707 | 8..686 | 3395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:35:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20836584..20836952 | 318..686 | 1845 | 100 | Plus |
| 3L | 28110227 | 3L | 20836210..20836520 | 8..318 | 1555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:35:24 has no hits.
UFO07976.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:33 Download gff for
UFO07976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3288-RA | 20..712 | 1..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:22:38 Download gff for
UFO07976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3288-RA | 20..712 | 1..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:22 Download gff for
UFO07976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3288-RA | 20..712 | 1..691 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:22 Download gff for
UFO07976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20836585..20836957 | 319..691 | 99 | == | Plus |
| 3L | 20836201..20836520 | 1..318 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:22:38 Download gff for
UFO07976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20829301..20829620 | 1..318 | 98 | -> | Plus |
| arm_3L | 20829685..20830057 | 319..691 | 99 | == | Plus |
