UFO07977.5prime Sequence
1162 bp (1052 high quality bases) assembled on 2011-07-17
> UFO07977.5prime
CAGTCGACATGAAATCAGAAACTGAGACTCTGCTCTTGCAAAATGCTGTT
CCTATAATAGATTTAGAAAATACCATCGAGGACGTGGCGACAAATCTGAG
AGAGGCTTTATCTGAAAAGGGGTATGCTCTGCTAATAAACCACGGTATTT
CAAATGAGAAGATTAAAAAAGCTTGGAAGTATTTCGATGGCTTTGTCGAC
CTGACCGATGAAGTTAAATTGGCATTTGAGAGAAGCAAAGCTCCAGATGG
CGAAAATCATGGTTACGTGAGTCCAGGAATGGAGCGATTTGATGGCAGGA
CACCGGAGCTGCGCCATGCTTACAATATATGCAAGCTGCAGGATAAATTT
CTGCCTGAACAGCAGCTACCAGGATTTAGCAGGCACATTAACTCCTTAGT
CGATGACTTCAATGAATTGGGTAGGTTTATTCTTAAGGCTCTGGCAATTT
CATTGGATGCTCCACCTTCGTTCTTCACGGATAAACATTCGTTTATGCTG
TCCGACGATCGCTTTAATCTGACCACCCTACGGATGCTGTTTTACCCGCC
CGTGGAAGATCAGGATCATGGAAGAAGCTTCATACGATGTGGAGCCCATG
CCGACTACTGCACCTTTACTCTGTTGGCTCAGGATTCGGAGGGTGGATTG
GAGGTCAAACTGCGGGGCAGTGACAAGTGGGAGCGAGTGGGTCATCTGCC
AGGAGCACTCTTCATAAACTGCGGTGAAACCATGGCTATCTGGACAGATC
AGTTCTACCACGCTTTGCAACATAGAGTAGTGATTCCCGATCAGGTTGAT
ATTCGCCATCGAGGCCGGCACTCCATTGCCTATTTCTGTCATCCTGATAA
CTCTGCACTGATTAATCCAAAAGATTTAAATATTACAACTAAGCAGACGA
CAGTGACGTATACAAACGCATATGATATAACTATGGCTCTGGCAAAAGGG
CATTTGCACATCATTATTCTGCAGCTTTCTAGACATTCGTTTGGCGCGGG
GGGCCCAGGTAAGTGTCATAATCATATCATTATTCATATCATATCACCAC
CTAGCTAAGAGATCCTGGTCATGAACTAAGTGGCTTGGATTCCCACCAAT
AAAAAACGCCCGGCGCGCAACGACGTTCTGAACATCCGAATGGGATCCGA
GGCAATAACTGG
UFO07977.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:35:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33093-RA | 1055 | CG33093-RA | 40..1005 | 9..970 | 4730 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:35:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22531071..22531678 | 767..160 | 3040 | 100 | Minus |
| 3R | 32079331 | 3R | 22531731..22531883 | 161..9 | 765 | 100 | Minus |
| 3R | 32079331 | 3R | 22530879..22531014 | 902..767 | 680 | 100 | Minus |
| 3R | 32079331 | 3R | 22530744..22530801 | 970..914 | 240 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:35:28 has no hits.
UFO07977.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:34 Download gff for
UFO07977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33093-RA | 40..1009 | 9..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:22:40 Download gff for
UFO07977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33093-RA | 40..1009 | 9..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:23 Download gff for
UFO07977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33093-RA | 40..1009 | 9..975 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:23 Download gff for
UFO07977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22530744..22530807 | 910..970 | 95 | <- | Minus |
| 3R | 22530871..22531013 | 768..909 | 99 | <- | Minus |
| 3R | 22531071..22531676 | 162..767 | 100 | <- | Minus |
| 3R | 22531731..22531883 | 9..161 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:22:40 Download gff for
UFO07977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18356466..18356529 | 910..970 | 95 | <- | Minus |
| arm_3R | 18356593..18356735 | 768..909 | 99 | <- | Minus |
| arm_3R | 18356793..18357398 | 162..767 | 100 | <- | Minus |
| arm_3R | 18357453..18357605 | 9..161 | 100 | | Minus |
