UFO07988.5prime Sequence
1134 bp (1039 high quality bases) assembled on 2011-07-17
> UFO07988.5prime
CAGTCGACATGGCCATCCTGGAGTCTTGTTGCTTTTGGAAGGATGTGCGG
AGTGGCAGCTTTGCCTGCGCCATCTACACGTTGGTTTACTTTGGCTTCTC
GACGCTGATGTTTTTGTTCTACCTAATCGAGGAACAGGACTTTCTGCTGG
GTAACCGTGCTCAGCCGCTGGGTGAAAGTTTGCTGGAGAAGGGCGATGTG
ACTGTAGTGACTGTGATATTCAACATTTTGTTGCTCTTTTGCTCCATACT
GATGGTGCTATCGTCGGTTCTGCTCATATTGGGCCTCCAGCAGAACAAGA
GACATCTGCTGATACCCTGGATTAGTTTCATGCTGGGCGATCTGCTCATC
GAGGTCTGCCACTTGGTCCACTTGGCCCTATCCCGCCGCGTCAAGTTCGA
TCCGATTGTCGGTTTCATCTTTACCATGGATTTCTTCCTACTGTGCCTCA
ATCTTTACTGTCTGCTGTGCGTCATCTCGCAGTACCAGACGTTCCGTTCC
CAGCGGGCGGAGATGCGACTGGCGGCCTCGACGGCATCGCCTATTGTGGT
CTTCACAGCAGCGGAGAAGCTAACCAAAGCACAGCAACAGCAACTGCACA
ATAATCTGTTGCAGCAGCTGGAGACCGGAAGCGGATATGGCAAGCGGCGA
CGTATGCTCGGAGCAGCCAGCCCGCTAATAACTTCGCAGCGGCCTACCAA
CTTCTCCACCATCACCGAGGAGGAGGAGCAGCAGTCCCGAACAGCACTGC
CAGGAATAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAG
GAGATCCTGGTCATGACTAGTGCTTGGATTCTCACAATAAAAACGCCCGG
GCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTA
CTGGATCTATCACAGGAGTCCAGCGAGCTCGATATCAAATTACGCCCCGC
CTGCCACTCATCGCAGTACTTGTTGTATTCATTAGCATTCTGCGACATGG
AGCCATCACAACGCTGATTGACCTGAATCCGCAGCGGCATCAGACCTGTC
CTTGGCTATATAATTGGCATGGTAACGGCCAAAA
UFO07988.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:36:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13288-RB | 1709 | CG13288-RB | 425..1174 | 9..758 | 3750 | 100 | Plus |
| CG13288-RC | 1392 | CG13288-RC | 425..1160 | 9..744 | 3680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:36:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5909391..5909596 | 539..744 | 1030 | 100 | Plus |
| 3L | 28110227 | 3L | 5908969..5909130 | 291..452 | 810 | 100 | Plus |
| 3L | 28110227 | 3L | 5908583..5908707 | 83..207 | 625 | 100 | Plus |
| 3L | 28110227 | 3L | 5908812..5908899 | 206..293 | 440 | 100 | Plus |
| 3L | 28110227 | 3L | 5909210..5909296 | 453..539 | 435 | 100 | Plus |
| 3L | 28110227 | 3L | 5907805..5907881 | 9..85 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:36:02 has no hits.
UFO07988.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:40 Download gff for
UFO07988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13288-RB | 401..1154 | 9..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:01 Download gff for
UFO07988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13288-RB | 425..1178 | 9..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:36 Download gff for
UFO07988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13288-RB | 425..1178 | 9..763 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:36 Download gff for
UFO07988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5908584..5908707 | 84..207 | 100 | -> | Plus |
| 3L | 5908814..5908899 | 208..293 | 100 | -> | Plus |
| 3L | 5908972..5909130 | 294..452 | 100 | -> | Plus |
| 3L | 5909210..5909296 | 453..539 | 100 | -> | Plus |
| 3L | 5909392..5909596 | 540..744 | 100 | -> | Plus |
| 3L | 5907805..5907879 | 9..83 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:01 Download gff for
UFO07988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5901914..5901999 | 208..293 | 100 | -> | Plus |
| arm_3L | 5902072..5902230 | 294..452 | 100 | -> | Plus |
| arm_3L | 5902310..5902396 | 453..539 | 100 | -> | Plus |
| arm_3L | 5900905..5900979 | 9..83 | 100 | -> | Plus |
| arm_3L | 5901684..5901807 | 84..207 | 100 | -> | Plus |
| arm_3L | 5902492..5902696 | 540..744 | 100 | -> | Plus |
