UFO07993.5prime Sequence
1108 bp (1010 high quality bases) assembled on 2011-07-17
> UFO07993.5prime
CAGTCGACATGGTGTTGCCGAGCAAAAAGTATAAAACCGACTACACGGAG
AACTCCTATCGTGCCCACATGAAGCTGACGATAAGAAACCTACAATATGG
TGACTTTGGCAACTATCGATGCATCTCGAAGAACTCGCTGGGGGAAACGG
AAGGCTCCATACGTGTTTACGAAATACCTTTGCCATCCACACCATCCAAG
CAGGTTACCCACACCACCGTCGAGTCCAGGGAGAACAATATCATACCCTC
ATCACGCAACGACACAACGAAATCCCTGCAAACGGATGTGGGATATGCCA
TGAAGAACGATTTATATCCAGGCTCGGCCTCCTCGTCATCTTCGGGAGGC
AGTTCCTCGGCGGCCTCGTCCTCCTCCTCGATGCAGACCTCGGCATTGCC
AGGAGGAGTGGCGGGAAATAGTCTATCATCGATGGGCTCCAAAGGATCCT
TGGCGATAGGCAAGAGCACGTTCTACACAGAACGACCACCGAATGAGTAC
GCCGCCTCGTCAGTGGCTGGCCTGCTGCTTCATAGAGCATTGCTGTTCGG
CTCTGGAATCTATCTGACCCTGCTTGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAT
GGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTC
GATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATT
CATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACC
TGATCGCAGCGGCATCAGCACTTGTCGCCTGCGTATATATTTGCCATGTG
AAACGGGGCGAGAGTGTCATATGCACGTTTAATCAAACTGGTGAACTCAC
CAGGATGCTGAACGAAAAATATTCTCATAACCGTTAGGATAGCAGGTTCA
CGTAACACGCCCAATCTCGCAAATATGTAGAACTGCGAATCGTCTGATTC
CACTCAGG
UFO07993.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:36:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34391-RE | 4735 | CG34391-RE | 1359..1925 | 9..575 | 2835 | 100 | Plus |
| CG34391-RD | 2139 | CG34391-RD | 1359..1925 | 9..575 | 2835 | 100 | Plus |
| CG34391-RB | 882 | CG34391-RB | 102..668 | 9..575 | 2835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:36:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5439190..5439471 | 235..516 | 1410 | 100 | Plus |
| 3L | 28110227 | 3L | 5436522..5436632 | 61..171 | 555 | 100 | Plus |
| 3L | 28110227 | 3L | 5437712..5437775 | 171..234 | 320 | 100 | Plus |
| 3L | 28110227 | 3L | 5439530..5439589 | 516..575 | 300 | 100 | Plus |
| 3L | 28110227 | 3L | 5436260..5436312 | 9..61 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:36:19 has no hits.
UFO07993.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:43 Download gff for
UFO07993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34391-RC | 721..1296 | 1..579 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:10 Download gff for
UFO07993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34391-RB | 57..632 | 1..579 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:42 Download gff for
UFO07993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34391-RB | 97..672 | 1..579 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:42 Download gff for
UFO07993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5436255..5436312 | 1..61 | 93 | -> | Plus |
| 3L | 5436523..5436632 | 62..171 | 100 | -> | Plus |
| 3L | 5437713..5437775 | 172..234 | 100 | -> | Plus |
| 3L | 5439190..5439471 | 235..516 | 100 | -> | Plus |
| 3L | 5439531..5439593 | 517..579 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:10 Download gff for
UFO07993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5429355..5429412 | 1..61 | 93 | -> | Plus |
| arm_3L | 5429623..5429732 | 62..171 | 100 | -> | Plus |
| arm_3L | 5430813..5430875 | 172..234 | 100 | -> | Plus |
| arm_3L | 5432290..5432571 | 235..516 | 100 | -> | Plus |
| arm_3L | 5432631..5432693 | 517..579 | 96 | == | Plus |
