UFO07994.5prime Sequence
1122 bp (988 high quality bases) assembled on 2011-07-17
> UFO07994.5prime
CAGTCGACATGCTTATTAAAGTTGCCAAGTTCCTGAGTATTGTAGCCGTA
CTCCTTTCAGCAGTCGAAGGAGCTAAATATCTGGCAGAGAAACCCGACTT
CCTAATCCCATGTATCGTGGGCGATCCCAACTTTAATGTCTGTCTGACCA
AAAACTTCCAGAGTTTCTTCCGTCAGTGGAAGGACGGAATTCCCGGCTAC
AATGCCGTGGGATCCTTTGATCCTTTTTACATCAAGAGAGTGAAATTTAC
CCAGGATGCCAGCAGGTCTATAGCTATCAATGCCGATCTGAAGGAAGTCT
ATGTAGCAGGTGCTGGTCAAGCATTAGTCTTGGAATCCAGCTGGGATCCA
AATCACTATGTAGCCAGGACTTTGATTTCCGTGCCCAAGTTGCGTTTCAA
TTTCGATTACAAAGTCAAAGGACACGTCTCAGCGCTGAATCTCAATGGTC
ATGGCAAGGGATACTTCGAAGCTGAAAATGCTCTGTTATTGTTGGAATTG
GCTGTCAAACCGCTGGCCACCTCAGATGGTTATTTCGCTGATGTGCAAAG
TGTAAAGGTAAATTTCCGCGAGATCAAGCAATTCCGCATCAAGCTGGAAA
ATCTCTTTGGCGGCAACAAGGATCTGGAGGATACTGCACACATTTTGTTC
AACGAAAACTGGCGCGACTTCTTTGAGGTACTGCGTCCGGCGGTGGAGCA
AACAGTTGGCGGAGTGCTTTTGGATCGGTTCAAGAAGACCTTTGTCTATG
TACCAGCTACCTATTTGATTAAAGACTTTCACGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAAATC
ATAATCATAATCACAACTAGGCCTAGGAGATCCTGGTCATGACTTAGTGC
TTGGATCCTCACAATAAAAACGCCCGCGGCAACCGAGCGTTCTTGAACAA
ATCAGATGGAGTTCTGGAGTCATTACTGGATCTTTTCAACAGGAGTCCAA
GCGGAGCTCGATATTCAAATTTACGCCCCCGCCCTGCCCACTCATCGCAG
TACTTGTTTTAATTTCATTTAGCATTTCTGCGACTTGAAGCATTCACAAC
CGCATTGATGTAACTTGATTCG
UFO07994.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:35:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14258-RA | 901 | CG14258-RA | 37..810 | 9..782 | 3870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:35:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27093825..27094133 | 474..782 | 1545 | 100 | Plus |
| 3R | 32079331 | 3R | 27093335..27093581 | 94..340 | 1235 | 100 | Plus |
| 3R | 32079331 | 3R | 27093633..27093769 | 338..474 | 685 | 100 | Plus |
| 3R | 32079331 | 3R | 27093179..27093263 | 9..93 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:35:43 has no hits.
UFO07994.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:37 Download gff for
UFO07994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14258-RA | 30..818 | 1..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:22:49 Download gff for
UFO07994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14258-RA | 30..818 | 1..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:29 Download gff for
UFO07994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14258-RA | 30..818 | 1..789 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:29 Download gff for
UFO07994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27093335..27093581 | 94..340 | 100 | -> | Plus |
| 3R | 27093636..27093769 | 341..474 | 100 | -> | Plus |
| 3R | 27093826..27094141 | 475..789 | 99 | == | Plus |
| 3R | 27093172..27093263 | 1..93 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:22:49 Download gff for
UFO07994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22919358..22919491 | 341..474 | 100 | -> | Plus |
| arm_3R | 22918894..22918985 | 1..93 | 95 | -> | Plus |
| arm_3R | 22919057..22919303 | 94..340 | 100 | -> | Plus |
| arm_3R | 22919548..22919863 | 475..789 | 99 | == | Plus |
