UFO07995.5prime Sequence
1086 bp (966 high quality bases) assembled on 2011-07-17
> UFO07995.5prime
CAGTCGACATGAACGGAGTAACTTATTTTGTGCTACTTCTTAGCTCTACT
TTGTTAGCTCTAGGTGGAGTTCAAAGTAAGCCCATGGGCAATGTCATCGA
TTTGGACAAGTATTTCGAGGAGGCAGACCTTAATTCCCAGGAGCGAGTTG
TTGGCGGTTACGATGTGCCAGAGGATGAATATGTTCCCTACCAGGTGTCC
ATGCAGTTTCTTACCCGCAGTGGAAAGATGCGACACTTCTGTGGTGGATC
CCTGATAGCCCCAAATCGCGTCCTTACCGCTGCCCACTGCGTCAATGGCC
AGAATGCCAGTCGAATTAGCGTAGTTGCTGGGATTAGGGATCTCAACGAT
AGCTCCGGCTTCCGATCGCAGGTGCAGTCGTACGAGATGAACGAGAACTA
CCAGGAGCTGGTGACTAGTGACATTGCCATCCTCAAGATCGATCCGCCCT
TTGAGCTGGACGAGAAGCGTGTGTCCACCATCGACGTCAGTGGATCGGAC
ATGGTAGGTGCCGATCAGGAGGTTCTCCTCACCGGATGGGGTTCTGTCTT
CCACTTTGGCACAGGTCCTTTCGCCAAATATCCCACTGTACTCCAGAAAC
TCGACTACAAGACACTGAGCAATTCCAAGTGCAAGGAGACGATGACCCAG
CTGACGGACACAGAGATCTGTGCCTTGGAAAGGTTTGGCAAGGGTGCCTG
TAATGGCGATTCTGGCGGTCCTTTGGTGATGAAGAGTGGTGAGTCCTATA
AACAGGTGGGCGTCGTCTCCTATGGAACTGCATTCTGTGCCTCGAACAAT
CCTGATGTCTATACCAGAGTGTCCATGTTTGACGGTTGGATTAAGGAAAG
AATGGTCGCAAGCTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAG
TGTCATAATCATAATCATAGTCATAATCATAATCACACTAGCCTAGAGAT
CCTGGTCATGACTAGTGCTGATCTCACCAATAAAAACGCCCGGCGGCAAC
GAGCGTCTGACATCAGATGGGAGTTCTGAAGTCATACTGAATCTATCACA
GGAGTCAGCGAGCTCGAATTCAATACGGCCCGCCCT
UFO07995.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:35:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12256-RA | 935 | CG12256-RA | 1..850 | 8..857 | 4250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:35:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12225581..12226183 | 705..103 | 3015 | 100 | Minus |
| 3R | 32079331 | 3R | 12225367..12225523 | 857..701 | 770 | 99.4 | Minus |
| 3R | 32079331 | 3R | 12226245..12226339 | 102..8 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:35:47 has no hits.
UFO07995.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:37 Download gff for
UFO07995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12256-RA | 1..860 | 8..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:22:50 Download gff for
UFO07995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12256-RA | 1..860 | 8..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:31 Download gff for
UFO07995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12256-RA | 1..860 | 8..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:31 Download gff for
UFO07995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12225357..12225519 | 705..868 | 96 | <- | Minus |
| 3R | 12225582..12226183 | 103..704 | 100 | <- | Minus |
| 3R | 12226245..12226348 | 1..102 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:22:50 Download gff for
UFO07995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8051079..8051241 | 705..868 | 96 | <- | Minus |
| arm_3R | 8051304..8051905 | 103..704 | 100 | <- | Minus |
| arm_3R | 8051967..8052070 | 1..102 | 97 | | Minus |
