UFO08001.5prime Sequence
1143 bp (1034 high quality bases) assembled on 2011-07-17
> UFO08001.5prime
CAGTCGACATGAGTACCTGCCTGGAACGATTTTTCTGTCCCAACAAACCT
GTCTGCAGCTCGGGCAGAAGAGCCACTTTCTATTATCCTGGAGGTGGGTC
CTACTCTGGCTACTGGTTATGCAACAAACACCAGGGCTGGGGCGTCAAAA
AGACGGCAAAGAGAACTTGCCAGTACTTTTATGGTAAAAAACATCCTGAA
GGCCAGCTCATTTATGAGGGAGACTGGGTAATGAACAAACGGCAGGGAGT
CGGATCAATGCTACGCAAACGCGGAACTGAGGTACAGCTGATATATTCGG
GAAGATGGTACGATGACATGAAATGTGGAGAAGGTAAGCAATTTTATTCA
GACGGTTGTGTCTACTTTGGAAAATGGATAAAAAATCGACGGCACGGTTT
GGGCATCCAGTGGTACAACGATGGGAATATTTATGCGGGCGAATGGGAAA
CAGATTTCCGGCATGGACTTGGGGTAATGTTTTACGCTAATGGAAACCGG
TACGAAGGACACTTTGCACGCGGATATAAAAATGGTGAGGGTGTTTTCTA
TCATATGCACACGGGACAAATTCAGAAAGGGATGTGGGAAAATGATAATT
TAAAGACGTCAGTGGTACAGGATGAACCAAAAATCCGTTGTAATGCTGTA
ATAACATCGTATCCGATTCCACGAAACTATCTTAAGTACCCCAACGAAAT
AATGCGAGACCTTTTTCAAAGGCACAAAGATTTTAGCAATAAGCCCCATC
GTAGATTCAATGACAGGGTCAGTCTTGCCTTTATTCACCATCACCGACAG
TACGCCTCCTGCGAAGAGCGCTTCGCTTCACCAACAATTGTAGACCTCTA
CCCCAGAGCTGAGTTTGGATGCACTTGCGACTGCGAAAATGTTGCCAGAA
CGAAACCAATATTAGTCAGATAGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAAGTGGTCATATCATATCATAATCATAATCATATCAC
AACTAGCCTAGAGATCTGTCATGACTAGTGCTTGGATTCTCACCATAAAA
AACGCCCGGGCGGCAACCGGAGCGTTCTGAACAAATCGAATTGGAGTTCT
GAAAGTCATTACTGGAATCCTAATCCACACAAGAAGTCCCAGG
UFO08001.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:36:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30429-RA | 1060 | CG30429-RA | 63..977 | 9..922 | 4550 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:36:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 25246529..25247006 | 9..486 | 2390 | 100 | Plus |
| 2R | 25286936 | 2R | 25247064..25247501 | 486..922 | 2140 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:36:26 has no hits.
UFO08001.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:44 Download gff for
UFO08001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30429-RA | 60..982 | 2..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:15 Download gff for
UFO08001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30429-RA | 60..982 | 2..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:45 Download gff for
UFO08001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30429-RA | 60..982 | 2..929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:45 Download gff for
UFO08001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 25246526..25247006 | 2..486 | 99 | -> | Plus |
| 2R | 25247065..25247506 | 487..929 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:15 Download gff for
UFO08001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 21134049..21134529 | 2..486 | 99 | -> | Plus |
| arm_2R | 21134588..21135029 | 487..929 | 99 | | Plus |
