UFO08005.5prime Sequence
1109 bp (994 high quality bases) assembled on 2011-07-17
> UFO08005.5prime
CAGTCGACATGAAACTGTTTACCAACAAAAACCAGCGCAATGCAAAGCTG
TTGCGCAGCGCCGCCCTCGGGATGACCCTGCTGTTCTTCGGTTCCCTGGT
GATAATCTCGGATCCTCTTCAGAGCATCCTGGACACGCAATTGAGCTTGA
AACCCGGCACCCTGCTCCATCGACTTTGGCTTCTGCCACCGTTGGACGTC
TACATCAATGTATACATGTTTAACTACACCAATGTGGATGAGTTCACGTC
GGGCAGAGCATCCAAGTTGCAGCTCCAGGAGGTGGGTCCTTATGTCTACA
AGGAGGTCTTGAGCAACCACAATGTCACCTACAATGAGTCCAACAATACC
ATCACGTATTCACCGAAACGCGAGTATGTCTTTGCACCAGAAAGATCTGT
GGGTGATCCCAAGATCGATCGCATCCGGGCGCCCAACATCCCACTGATGG
GAGTGACCACTCTGGCATCAAGTCTATCGATGTTCGCCGCCCTGGGTCTG
AGTGCCATTACCAGGCAGCTGAACTCGCAGCCCATGCTGGAAATGAGCGT
TCACGACTACATGTGGGGCTATGAGGATCACCTGGTAGAGCTGGCCTCTC
GGTTCGTGCCCAATTGGATTGACTTCTCCAGCTTTGGCATTATGGAGAAG
CTCTTCCGAGAGGGAAATGAGAGCAATGTGTTCAACATGAACTTGCCGGA
ACCCAAGGACAAGTATGGAATGAGAATGACGGATGCTCCGCGTGGTTATA
CCGTGGATAGCATCAATGGTGAACGCGGTTTCAAGGGTTGGCAGTACAAT
GAGGAGACCAATGGAACCATGTGCAATCGCATCTGGGGCAGTCATGATGC
CACGCTCTTTCCGCTGGACATGGATGAGAACGACGAGTTCTTTTTGTACA
GGCGACCTTCTGCCGCAGTTGCCGTGAAATTCAATCGCACACCACTTCAT
GCTCGATGCTTTGAGTCGTAATGGAGCGACTCTCGACAGCGAGTGACATG
CCAACTCTCGTGCTACTGCAGACATCGTGCCCTCAAGAAGGGTTTGGCAT
TGTTCAACCTGTTACTACAACATCCTAGCATACGTATCCGCAATTTCATG
CCATGGCGA
UFO08005.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:36:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10345-RA | 2423 | CG10345-RA | 538..1657 | 9..1101 | 4860 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:36:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16598556..16599069 | 650..137 | 2570 | 100 | Minus |
| 3R | 32079331 | 3R | 16598338..16598500 | 811..649 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 16598147..16598278 | 940..812 | 510 | 97.7 | Minus |
| 3R | 32079331 | 3R | 16599651..16599747 | 137..41 | 470 | 99 | Minus |
| 3R | 32079331 | 3R | 16604288..16604324 | 45..9 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:36:30 has no hits.
UFO08005.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:45 Download gff for
UFO08005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10345-RA | 460..1590 | 1..1108 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:16 Download gff for
UFO08005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10345-RA | 533..1663 | 1..1108 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:47 Download gff for
UFO08005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10345-RA | 533..1663 | 1..1108 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:47 Download gff for
UFO08005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16598338..16598498 | 651..811 | 100 | <- | Minus |
| 3R | 16598556..16599068 | 138..650 | 100 | <- | Minus |
| 3R | 16599651..16599742 | 46..137 | 100 | <- | Minus |
| 3R | 16604288..16604329 | 1..45 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:16 Download gff for
UFO08005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12425373..12425464 | 46..137 | 100 | <- | Minus |
| arm_3R | 12430010..12430051 | 1..45 | 91 | | Minus |
| arm_3R | 12424060..12424220 | 651..811 | 100 | <- | Minus |
| arm_3R | 12424278..12424790 | 138..650 | 100 | <- | Minus |
