UFO08006.5prime Sequence
1125 bp (1032 high quality bases) assembled on 2011-07-17
> UFO08006.5prime
CAGTCGACATGTTGTCGCTGTCATCGCCGCCGTGGCTCTTGCTCCTCGTC
CTTTTCTTCTTCGCAAATGGCTCGGCAACAGTGGTTTCCTTGGCGGAGAA
TGTGACTCTGGCGACGTTACCATCCACCTCGCCAATTTCCGTGAGCTTTA
GCACGACCTCCTCGGTGGTGGCGCCCATTTCCACCGAATTGGAGAATCAA
ACAGCCAGCAGCAGCAACCTTAATACAAACAACGAAGCCAGCGATGAGCA
AACTGGCAATAGCAACAGCAACACGAGCAGTCACAGCAGAAACATCAATG
GTTTGCCCAGCAGCAACAGCAACATTGACAATGCCAACAGCAACTCAAGT
TCCGTTTCCTCTTTGAGTACAACGACATCTGCCATTTCTGGTGTAGATCA
GCAGGAGTCCCTCATCCTGGCAACTCCCACTGCCCTGAATGGCAGCGGTA
CACCGCCCGAGCATCAGACAATTGGTCAGGCACCGCCCACAAAGGGTGAA
CAGGAGGCCATCCTGCGAGCTTTGGATTGGCTCAAGGAGAAGAGGGCTTC
GGACTACGGCTGGGGCAACGATACCCATGTGGTTATACTGGCCAAAGAGC
TTTCCGGCGGCCGAGATCCTAACGATAGTGTAGATGGTCATGTGCAGGTC
ATCCAAGAGCTGGAGGATACGCTATCCGTGAAGGAAATGGAGATCGAGAT
CCTGGCCATGCTGGATCGCCATCATACACTCCCAAAGCCCCTGGATCTCG
ACAAGCTGGCCAGATACGTCCTGGCCTTGGGTTCCCTGTGCAAGGACCCG
AAGCATTTCCATGGCCACGACTTGGTGGCCACACTGCAGCATCATGAGCC
GGCCCAGGATATTGAGTTCGCACTAACCACTCTGTCGGCCTGCAGTTCGG
CGGCCCATGTAAGGAAACGTCAGATCCGACGGCTCCTGACATTGCCAGCG
GAGTGACGGACCAGAGCGTTGATGCCATGCCATGGTATTCTAGCTTGCGT
TGCATCGTCACGATCATCGCATCGACATCTGCAACACTTTGTCGACGACG
GGCGGAGGGGACTGGCCACTCTGCAGATCAGCGCGGCCAGTTCGGATCGC
TTAGGACAGCACTCGCATGCAGCTC
UFO08006.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:36:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3556-RB | 3890 | CG3556-RB | 225..1349 | 9..1122 | 5265 | 98.6 | Plus |
| CG3556-RA | 2426 | CG3556-RA | 385..1509 | 9..1122 | 5265 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:36:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4531310..4532414 | 9..1106 | 5020 | 98.8 | Plus |
Blast to na_te.dros performed 2014-11-27 00:36:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6700..6922 | 185..404 | 217 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2394 | 255..344 | 216 | 71.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6899 | 206..344 | 210 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6872 | 206..344 | 209 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6914 | 206..344 | 200 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2445 | 201..344 | 197 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2415 | 256..344 | 195 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2537 | 206..384 | 194 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6878 | 206..344 | 193 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2466 | 170..344 | 192 | 59.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1065..1168 | 247..350 | 186 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2427 | 214..344 | 174 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2406 | 257..344 | 174 | 70.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2538 | 206..344 | 169 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6815 | 256..344 | 166 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6949 | 207..325 | 156 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6951 | 206..347 | 153 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6794 | 259..344 | 150 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6843..6923 | 200..278 | 138 | 69.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1155 | 205..300 | 138 | 66 | Plus |
| BS | 5142 | BS BS 5142bp | 1942..2075 | 194..326 | 126 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2734..2824 | 229..324 | 120 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2667 | 261..332 | 118 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 999..1130 | 217..344 | 118 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2747..2820 | 268..344 | 117 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1576 | 263..324 | 113 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6773 | 308..344 | 113 | 78.4 | Plus |
UFO08006.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:46 Download gff for
UFO08006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3556-RA | 381..1513 | 1..1125 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:18 Download gff for
UFO08006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3556-RA | 381..1513 | 1..1125 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:49 Download gff for
UFO08006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3556-RA | 381..1513 | 1..1125 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:49 Download gff for
UFO08006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4531306..4532438 | 1..1125 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:18 Download gff for
UFO08006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4425339..4426471 | 1..1125 | 98 | | Plus |
