UFO08009.5prime Sequence
1138 bp (1024 high quality bases) assembled on 2011-07-17
> UFO08009.5prime
CAGTCGACATGGGACCGCCGAAAAAATCGAGAAAGGATCGCAGCGGTGGT
GACAAGTTCGGCAAAAAGCGGCGTGCCGAGGATGAGGCTTTCACCCAACT
GGTGGACGACAATGATAGTTTGGATGCCACAGAATCGGAAGGAATTCCGG
GTGCAGCGTCCAAGAATGCGGAGACCAATGACGAGCAAATCAATACGGAT
GAGTACGGCGCCAAGGATTACCGGTCGCAGATGCAACTGCGTCCGGATCA
CGGAAATCGACCACTTTGGGTTGCGCCCAATGGTCACGTCTTCCTGGAAT
CATTCTCGCCCGTCTATAAGCATGCCCACGATTTTCTTATCGCCATTTCG
GAGCCCGTCTGCCGACCCGAACACATTCACGAGTACAAACTTACCGCATA
CAGTTTATATGCCGCCGTTTCGGTGGGACTGCAAACCCATGACATTGTGG
AATACTTGAAGAGATTGAGCAAGACCAGCATTCCCGAAGGCATCCTTGAG
TTTATACGACTCTGCACCCTATCCTATGGCAAGGTCAAGCTGGTCTTGAA
GCATAACAAGTACTTTATCGAGTCACCACATCCTGAGGTGCTGCAAAAGT
TACTTAAGGATCCAGTGATCCAGAAATGCCGCCTCATACGCAGCGAGGGA
GAGGATTTCATTCAGGGAACCCTGGACGGCAAGGCTATTACTCAATTCGG
GACCAAACTGCCGCCAGGAGCCACGGACAAGCCGACACCAGATCCTGCAG
CAGCCGCAGGAGCTGATGGAACCACAGCAGTGCCAGAAGATATCACAGAC
TTCTACGAGAAGATCGACAAAGAGGAGAGGACGAGGATGACGCCAATCTG
AAGACCGTGTCGTTTGAGGTGGCCCAGGAGAAGATCGAAGTGATTCAGAA
ACGATGCATCGAGATAGAGCATCCTCTATTGGCGGAGTACGATTTCCGCA
ACGATACCAACCATCCAGACATAATATGACCTCAAACCCGCTGCCGTCTG
CGTCCATTATCAGGAGAGAGTCTGCGCAGATGTTTGCAATGAAAGCCCGC
TCTGATGTTATGTGCTCTTGGTGGTGCAGGAAATTCCTATGGGGGTCTAC
AGCATGCTGCACGTACGAAGAGACACTAGGTTCTGTGT
UFO08009.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:36:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hay-RB | 2511 | CG8019-RB | 67..1208 | 9..1137 | 5130 | 97.6 | Plus |
| hay-RA | 2604 | CG8019-RA | 160..1301 | 9..1137 | 5130 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:36:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10631519..10632491 | 60..1028 | 4540 | 99.2 | Plus |
| 3L | 28110227 | 3L | 10631408..10631460 | 9..61 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:36:39 has no hits.
UFO08009.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:46 Download gff for
UFO08009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hay-RB | 67..1208 | 9..1137 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:19 Download gff for
UFO08009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hay-RA | 160..1301 | 9..1137 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:52 Download gff for
UFO08009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hay-RA | 160..1301 | 9..1137 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:52 Download gff for
UFO08009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10631408..10631459 | 9..60 | 100 | -> | Plus |
| 3L | 10631520..10632609 | 61..1137 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:19 Download gff for
UFO08009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10624508..10624559 | 9..60 | 100 | -> | Plus |
| arm_3L | 10624620..10625709 | 61..1137 | 97 | | Plus |
