UFO08013.5prime Sequence
1123 bp (1025 high quality bases) assembled on 2011-07-17
> UFO08013.5prime
CAGTCGACATGCAGAACGTTATACTTACATCGCAATACTATTGGTCACGT
AGGGCTAGTCAAGATGTTTCCAGTTTGTCACGCAGCGTTGACAATTTGGC
GATACCCGTGCGCAGGAGCAAATCGCGCAGCGTGGATCACGGCCTTGCGG
CTCCATTCGACTTGGACTCACTCCGCTCCAAAGTGGAGCAGCGCTTCGAG
AGCGTCGACAAATTATCAAGGCAAAAGTCTTCATTGCCCACCATACCCAC
CATTTCCTACACCGTGGGCAATCGCGACACCCTGACCTCCGTGGCCGCCC
GGTTCGACACCACGCCCTCGGAGCTGACCCACCTCAACCGGCTGAACAGC
TCCTTCATCTATCCGGGCCAGCAGCTGCTGGTGCCGGACAAGAGCGCCAA
GGACGACGCCTCCAGCAGCTCCACCCACGACGCGGACGGTGCCAGCCTGT
CCGGCAAATCGAGTCCGGTCGAGCGCAAGTTGTCCGGCGACGAGAGCCGC
GAGAAAGACATACTCGAGGGCCTGCGCCCCGGATCCCCAAAACCGGGACA
CATCGAGCGCGTGGGCGGCAGTAGCCAGCAGCAGCAGGCGGAGGAGGAGG
CCAACAAAAGCGACGATCCGGTGATCACACAGCGCTTCCTCAAGATCAAT
GTGCGCCACATCACGGACGGACAGGGCGTGGTGGGCGGCGTCCTGCTGGT
CACGCCCAACGCCGTTATGTTCGATCCCAACGTCAGCGATCCCCTGGTCA
TCGAGCACGGCCCGGAGAGCTACGGCGTCATTGCGCCCATGGAGCTGGTG
GTCAACGCCGCCATCTTCCACGACATTGCGCACATGCGAGTGGCCCGGAG
GAGCAGGTCAAGGTCTGAACTCCGCCTCGGGAGACGCGGAGAAACCGGAA
ATCTACTATCCCAAACCAGTATTAGTCGAAGAGACTCCAAGAGCTACCCG
AGCAGCAGTCGCTGCTGGGCGAAGACGGTATAAGCGCTTAGATGCAGAAA
ATAGGTCGCTGGAAATCGCTGACGACAGAGTCGCTTTGCTCAGCACTGAC
GCGATGCGACGCGTTTCCAAGCTTCGACCGGTAACGTGTGGAGACTCTTC
TATGAAGCCTAGAAGGCTAGACT
UFO08013.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:36:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtd-RK | 4502 | CG32464-RK | 335..1447 | 9..1109 | 5120 | 98.1 | Plus |
| mtd-RG | 4780 | CG32464-RG | 679..1791 | 9..1109 | 5120 | 98.1 | Plus |
| mtd-RO | 4332 | CG32464-RO | 255..1367 | 9..1109 | 5120 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:36:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5296147..5296637 | 994..506 | 2230 | 98.8 | Minus |
| 3R | 32079331 | 3R | 5298202..5298489 | 507..220 | 1440 | 100 | Minus |
| 3R | 32079331 | 3R | 5299469..5299576 | 220..113 | 525 | 99.1 | Minus |
| 3R | 32079331 | 3R | 5304110..5304183 | 116..43 | 370 | 100 | Minus |
| 3R | 32079331 | 3R | 5305709..5305745 | 45..9 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:36:51 has no hits.
UFO08013.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:48 Download gff for
UFO08013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)82Fd-RK | 671..1799 | 1..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:26 Download gff for
UFO08013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtd-RO | 247..1375 | 1..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:56 Download gff for
UFO08013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtd-RO | 247..1375 | 1..1120 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:56 Download gff for
UFO08013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5296147..5296635 | 508..994 | 98 | <- | Minus |
| 3R | 5298202..5298489 | 220..507 | 100 | <- | Minus |
| 3R | 5299470..5299573 | 116..219 | 99 | <- | Minus |
| 3R | 5304111..5304182 | 44..115 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:26 Download gff for
UFO08013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1121869..1122357 | 508..994 | 98 | <- | Minus |
| arm_3R | 1123924..1124211 | 220..507 | 100 | <- | Minus |
| arm_3R | 1125192..1125295 | 116..219 | 99 | <- | Minus |
| arm_3R | 1129833..1129904 | 44..115 | 100 | <- | Minus |
