UFO08014.5prime Sequence
1141 bp (1003 high quality bases) assembled on 2011-07-17
> UFO08014.5prime
CAGTCGACATGTGGCACGAGGCGAGGAAACAGGAGCGCAAGATCCGTGGC
CTGATCGTCGATTACCGCAAGAGGGCGGAGCGGCGGCAGTACTTCTACGA
CAAAATTCAGGCAGATCCCACCCAGTTTCTGCAACTGCATGGCCGGCGAA
GCAAGATCTACTTGGATCCCGCGGTGGCCGCCGCCGGCGATGGAGCCGCA
ATCATTGTGCCTTGGCAGGGTCAGCAGGACAACCTCATCGACCGCTTCGA
TGTACGCGCCCATTTGGATCACATTCCTCCCGTGAACAAGACCAACGCCG
AGGGGGCGGATGGTGACTCCGAACTGACCCTCGAGGAGCGTCAGCTAAAC
TACGAGCGCTATCGCATCCTGGCGCAAAATGACTTCCTCAACGTCAGCGA
GGATAAGTTTCTGCACCAACTCTACCTGGAGGAACAGTTTGGGGCCAATG
CCCAACTGGAGGCGGAACGGAATCTGGCCAAAAAGAAGCAGAAGACGGGA
GGAGCCACAATTGGCTACTCCTACGAAGATACCGGCGATGGAGCGACTAT
TGGACCTCAGCCTTTTGGAGCCGCCAGTTCAACTGTCATTGGTGGAGCGG
CAGCTGTTGCGAAGGGTGAAAAGGGGGATGGCAGTGAAGAATCGGATTCT
GACATCGATATGGATGTGTCGATAGACATCGGCAAGCTGGACACCTCGCA
AGCCCATGAGCTTAACGCCTGCGGGCGCAACTACGGCATGAAAAGCAACG
ACTTCTTCTCACACCTCACTAAGGATGCTGACGAGGCGGATGCCCTGCGC
ATTGCGCGCGAGGAGGAGCAGGAGAAGATGCTGCTGAGCGGGCGCAAGTC
AAGACGCGAGCGTCGGGCGCAAAAGGAGAGAAGGATCGCCAATAGACCAT
TCAGTCCGCCAAGCTATGCTGCCAAGGAGGATAGGACAAAAAAGGGGGGG
TAAGGCGGTGAGAAAGAAAAGGAGGAGGACAGCCGAATCGCGTTCGCCGT
CGCCCGCGTAAGCAAGTTCCCGAGAAAGATAACTTACATTACCTCGTTGG
GGGGCGAGGAACGAAATGGCAGCCGCACTTCAGATTCACAATCAGCCTGA
CGAAGCTGTCTGAACCATGGGTGAATCATGCATCAATGCAG
UFO08014.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:36:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6695-RA | 3170 | CG6695-RA | 125..1254 | 9..1139 | 5225 | 98.1 | Plus |
| CG6695-RB | 3129 | CG6695-RB | 125..1254 | 9..1139 | 5225 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:36:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24655572..24656504 | 206..1139 | 3985 | 97.4 | Plus |
| 3R | 32079331 | 3R | 24655284..24655480 | 9..205 | 985 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:36:55 has no hits.
UFO08014.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:49 Download gff for
UFO08014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6695-RA | 113..1255 | 1..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:28 Download gff for
UFO08014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6695-RB | 115..1257 | 1..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:58 Download gff for
UFO08014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6695-RB | 115..1257 | 1..1141 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:58 Download gff for
UFO08014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24655274..24655480 | 1..205 | 98 | -> | Plus |
| 3R | 24655572..24656507 | 206..1141 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:28 Download gff for
UFO08014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20480996..20481202 | 1..205 | 98 | -> | Plus |
| arm_3R | 20481294..20482229 | 206..1141 | 97 | | Plus |
