UFO08018.5prime Sequence
1145 bp (1053 high quality bases) assembled on 2011-07-17
> UFO08018.5prime
CAGTCGACATGAATAGGTTTTGGATAATCGCTTTACTTTTAGGATTACAG
CAAACAAAGCCAATAAATGGACAATCGGATGTGCTGGTGAATCTAGTGGT
GCCGCGATATGTGGAGCGCGGATCGAGTGCCACCTTCAAATGCACGCACA
ATGTCCGGCCGGAAATACTGTTCAAGGTTACATGGCTGAAGGTTGACAAG
GGCAAGTTCTTTGAATTCATAAACGGACGAAATCCGCCATTCCGTAACTC
AACCATCGAGGGAGCCGAAATCGACTGGGACAATTCCAACGAGCAGCAGG
TGACACTGAAGGATGTCCAGTTCGATCTATCCGGCCAATTCTACTGCGAG
GTCTCCACGGACACCCCCATTTTTACCAAGGCCAGCGCCGATGAGCTGAT
GAGCGTGTTCTTGCCCCAGACGGGTCCGCCCACCATTAAGTTTCGCAAGC
GAACGCCCTTCGCGGTGGGCGAGAAACTTTTCGCCCTGTGCAACACCACC
CGCGGCCGGCCTGCGCCGCACATCACGTGGCTAATCAATGGGAAAAAGGT
GGAGGACAGGTACGTGCGCACCCACCACGTGTTCTCCTTCAATGGGAAGC
ACCAGCACCAGCGTCGCACGCAGCAGCAGCAGCAGACGCAGCTGAGTCAG
CAGCAGCTGCAGCAGCAGTATTTCCAGCAGCAGTACTTCAACCAGTACCA
TCAGCAGTATCACATCCCCGTTGGCCAATTCATGGATCGCTACGACAAAA
GCCTACGATGGCCAGCAGGAGCACGAGCGGATGAGTTCCCGCACTTTTTG
TCGCACCACCATGAGGGGCACGGTCACCACGGTAGCCTGTACAACAATCC
GTTTGGATCGCTGGCCAACTACCATGACGTGGGCGAGTTCCACGAGGTGC
ATCAGCGCACTACGACAGCAACAGAGACATGGAGCTGAGAAGCAGCAGCA
GATGGAGATGAGAAGCACAGGAACAGCACCGCAAGTATCGGCGCCCACAT
AAACGAGAACGCCCTGGGCATCATTTCGCCAGCACCTTGAACAACGGCGG
CTTCGGTCCTCAGCTCCAACATGAACAAGGAGCTGGCCATCCCAATCAAA
CGCTGAACCAATGAAACAGCCTGGGCAACGGCTACACGACGCTTT
UFO08018.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:37:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-VII-RD | 6138 | CG42242-RD | 533..1649 | 9..1120 | 5190 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:37:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26662090..26662329 | 786..547 | 1185 | 99.6 | Minus |
| 3R | 32079331 | 3R | 26661534..26661731 | 971..780 | 715 | 95.5 | Minus |
| 3R | 32079331 | 3R | 26662989..26663128 | 551..412 | 700 | 100 | Minus |
| 3R | 32079331 | 3R | 26663217..26663352 | 411..276 | 680 | 100 | Minus |
| 3R | 32079331 | 3R | 26666780..26666891 | 178..67 | 560 | 100 | Minus |
| 3R | 32079331 | 3R | 26663598..26663698 | 275..175 | 505 | 100 | Minus |
| 3R | 32079331 | 3R | 26651239..26651390 | 1120..968 | 350 | 89.1 | Minus |
| 3R | 32079331 | 3R | 26681377..26681434 | 66..9 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:37:03 has no hits.
UFO08018.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:51 Download gff for
UFO08018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-VII-RD | 533..1658 | 9..1131 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:31 Download gff for
UFO08018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-VII-RD | 533..1658 | 9..1131 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:01 Download gff for
UFO08018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-VII-RD | 533..1658 | 9..1131 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:01 Download gff for
UFO08018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26661535..26661730 | 781..970 | 96 | <- | Minus |
| 3R | 26662096..26662327 | 549..780 | 100 | <- | Minus |
| 3R | 26662992..26663128 | 412..548 | 100 | <- | Minus |
| 3R | 26663217..26663352 | 276..411 | 100 | <- | Minus |
| 3R | 26663598..26663696 | 177..275 | 100 | <- | Minus |
| 3R | 26666782..26666891 | 67..176 | 100 | <- | Minus |
| 3R | 26681377..26681434 | 9..66 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:31 Download gff for
UFO08018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22487257..22487452 | 781..970 | 96 | <- | Minus |
| arm_3R | 22487818..22488049 | 549..780 | 100 | <- | Minus |
| arm_3R | 22488714..22488850 | 412..548 | 100 | <- | Minus |
| arm_3R | 22488939..22489074 | 276..411 | 100 | <- | Minus |
| arm_3R | 22489320..22489418 | 177..275 | 100 | <- | Minus |
| arm_3R | 22492504..22492613 | 67..176 | 100 | <- | Minus |
| arm_3R | 22507099..22507156 | 9..66 | 100 | | Minus |
